Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 1.7e-154 549.7 354 100.0
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 2.3e-143 512.7 361 91.7
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 2.1e-141 506.1 361 91.7
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 5.4e-137 491.5 359 90.0
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 1.6e-128 463.4 364 88.2
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 9.9e-123 444.1 357 83.5
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 1.1e-116 424.1 355 84.5
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 2.4e-113 412.9 359 78.0
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 9.3e-113 411.0 361 83.1
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 3.0e-111 406.0 353 74.2
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 4.8e-109 398.7 355 80.6
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 3.1e-92 342.8 358 66.2
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 4.8e-85 318.9 357 60.5
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 4.5e-67 259.2 316 53.8
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 5.5e-65 252.3 311 54.3
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 3.6e-64 249.6 345 60.0
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 1.2e-62 244.6 263 59.7
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 2.2e-61 240.4 261 54.8
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 1.4e-60 237.7 270 60.0
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 4.1e-60 236.1 319 55.5
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 4.1e-60 236.1 270 60.7
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 5.4e-60 235.7 260 60.4
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 1.2e-59 234.6 263 60.1
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 1.2e-59 234.6 261 54.4
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 3.8e-58 229.6 339 45.1
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 6.6e-58 228.8 361 49.6
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 6.6e-58 228.8 356 48.6
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 8.6e-58 228.4 346 51.2
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 8.6e-58 228.4 266 61.7
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 1.5e-57 227.6 357 49.6
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 9.5e-57 224.9 354 47.7
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 9.5e-57 224.9 344 47.1
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 1.6e-56 224.2 347 45.5
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 1.6e-56 224.2 267 60.7
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 6.1e-56 222.2 345 52.5
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 1.4e-55 221.1 257 52.1
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 4.0e-55 219.5 279 57.3
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 5.2e-55 219.2 354 51.1
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 6.8e-55 218.8 262 53.8
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 8.9e-55 218.4 259 52.9
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 1.2e-54 218.0 259 61.4
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 1.2e-54 218.0 291 48.5
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 1.2e-54 218.0 266 49.2
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 1.2e-54 218.0 333 52.0
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 2.0e-54 217.2 292 51.4
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 2.0e-54 217.2 256 52.3
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 2.6e-54 216.9 259 57.1
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 4.4e-54 216.1 255 59.6
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 4.4e-54 216.1 256 55.1
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 5.7e-54 215.7 270 55.6
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 7.5e-54 215.3 350 54.3
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 7.5e-54 215.3 350 54.3
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 1.3e-53 214.5 266 51.9
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 1.7e-53 214.2 265 55.8
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 2.2e-53 213.8 258 50.0
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 2.8e-53 213.4 265 57.0
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 3.7e-53 213.0 291 51.9
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 4.9e-53 212.6 359 48.2
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 6.3e-53 212.2 257 57.2
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 6.3e-53 212.2 263 50.2
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 1.4e-52 211.1 256 58.2
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 1.4e-52 211.1 352 50.3
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 1.8e-52 210.7 261 50.2
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 9.2e-52 208.4 302 48.7
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 9.2e-52 208.4 272 59.6
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 1.2e-51 208.0 258 50.4
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 1.2e-51 208.0 349 47.9
C09p65600 Brassica napus HOM05D000552 ORTHO05D003270 1.6e-51 207.6 198 87.9
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 1.6e-51 207.6 271 59.4
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 4.5e-51 206.1 266 53.0
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 2.3e-50 203.8 268 57.5
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 2.3e-50 203.8 358 45.3
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 2.3e-50 203.8 273 53.8
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 2.9e-50 203.4 255 56.5
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 3.8e-50 203.0 169 62.7
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 5.0e-50 202.6 257 51.8
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 1.5e-49 201.1 254 48.8
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 2.5e-49 200.3 260 49.6
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 3.3e-49 199.9 262 56.5
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 7.3e-49 198.7 256 52.3
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 1.6e-48 197.6 257 49.0
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 3.6e-48 196.4 255 53.7
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 1.0e-47 194.9 269 57.6
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 1.4e-47 194.5 266 46.6
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 1.8e-47 194.1 265 52.1
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.3e-47 193.7 247 59.5
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 3.1e-47 193.4 257 50.2
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 1.5e-46 191.0 352 43.8
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 3.4e-46 189.9 360 51.1
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 4.4e-46 189.5 168 57.1
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 5.8e-46 189.1 295 46.8
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 1.3e-45 188.0 171 61.4
CiPaw.08G012700 Carya illinoinensis HOM05D006924 ORTHO05D008218 1.1e-44 184.9 278 50.0
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 2.4e-44 183.7 257 47.5
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 1.0e-42 178.3 265 46.0
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 1.5e-41 174.5 256 43.8
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 1.1e-39 168.3 149 61.7
PGR044G1352 Punica granatum HOM05D006924 ORTHO05D008218 5.2e-39 166.0 229 59.4
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 2.9e-37 160.2 160 56.2
Haze_21546 Corylus avellana HOM05D006924 ORTHO05D008218 2.7e-35 153.7 250 52.4
Lj7C719T2 Lonicera japonica HOM05D006924 ORTHO05D008218 3.6e-32 143.3 220 55.0
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 5.2e-31 139.4 146 54.1
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 7.3e-25 119.0 117 54.7
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 1.6e-24 117.9 272 40.8
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 1.2e-22 111.7 254 38.6
Atru.chr7.2280 Acer truncatum HOM05D006924 ORTHO05D008218 4.9e-21 106.3 123 52.8
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 2.4e-20 104.0 255 34.9
Atru.chr10.503 Acer truncatum HOM05D006924 ORTHO05D008218 2.1e-16 90.9 311 30.5
Haze_21544 Corylus avellana HOM05D006924 ORTHO05D008218 3.9e-10 70.1 52 59.6
SEGI_32810 Sequoiadendron giganteum HOM05D006924 ORTHO05D008218 8.7e-10 68.9 225 33.8
TPR.G28713 Trifolium pratense HOM05D006924 ORTHO05D008218 8.7e-10 68.9 39 71.8
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 1.5e-09 68.2 100 36.0
Nn2g11969 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.3e-08 65.1 192 33.3
Atru.chr1.1063 Acer truncatum HOM05D006924 ORTHO05D008218 1.8e-07 61.2 87 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1808 Anthoceros agrestis HOM05D006924 ORTHO05D008218 5.3e-07 59.7 132 34.1


User provided reference genes

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