Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 2.9e-162 575.1 278 100.0
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 2.9e-162 575.1 278 100.0
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 8.5e-162 573.5 278 99.6
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 1.0e-159 566.6 278 98.2
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 1.0e-159 566.6 278 98.2
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 6.3e-141 504.2 280 90.4
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 6.8e-127 457.6 280 83.6
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 6.8e-127 457.6 279 83.9
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 6.6e-122 441.0 280 78.9
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 5.8e-118 427.9 279 77.8
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 4.9e-117 424.9 280 77.9
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 3.2e-116 422.2 280 77.5
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 1.3e-96 357.1 289 65.4
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 2.8e-88 329.3 282 63.5
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 3.9e-58 229.2 277 48.4
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 8.8e-58 228.0 269 48.7
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 4.4e-57 225.7 266 49.6
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 1.4e-55 220.7 274 47.1
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 1.2e-54 217.6 239 49.0
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 1.5e-54 217.2 274 45.6
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 1.5e-54 217.2 277 44.0
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 3.5e-54 216.1 239 48.1
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 4.5e-54 215.7 250 48.0
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 5.9e-54 215.3 268 45.9
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 5.9e-54 215.3 240 45.8
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 1.3e-53 214.2 269 47.6
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 1.3e-53 214.2 272 43.8
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 1.7e-53 213.8 269 43.9
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 1.7e-53 213.8 272 46.3
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 2.2e-53 213.4 280 43.9
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 5.0e-53 212.2 277 43.7
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 6.5e-53 211.8 269 43.9
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 8.5e-53 211.5 239 47.7
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 1.4e-52 210.7 269 46.8
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.4e-52 210.7 276 45.3
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 1.9e-52 210.3 252 45.2
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 2.5e-52 209.9 266 44.7
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 4.2e-52 209.1 279 45.9
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 5.5e-52 208.8 267 42.3
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 1.2e-51 207.6 271 45.8
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 1.6e-51 207.2 232 47.4
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 2.7e-51 206.5 277 45.5
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 2.7e-51 206.5 266 45.1
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 2.7e-51 206.5 239 47.3
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 2.7e-51 206.5 266 46.2
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 3.6e-51 206.1 244 45.1
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 4.7e-51 205.7 271 44.6
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 6.1e-51 205.3 271 45.4
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 6.1e-51 205.3 275 43.6
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 6.1e-51 205.3 239 44.4
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 1.4e-50 204.1 268 44.8
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 1.4e-50 204.1 273 44.3
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 5.2e-50 202.2 246 45.1
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 1.5e-49 200.7 254 46.5
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 3.3e-49 199.5 267 42.3
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 3.3e-49 199.5 256 42.2
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 7.4e-49 198.4 238 45.4
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.7e-48 197.2 276 43.5
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 2.2e-48 196.8 246 44.3
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 2.8e-48 196.4 246 44.3
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 3.7e-48 196.1 241 45.6
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 4.8e-48 195.7 246 44.3
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 6.3e-48 195.3 266 44.4
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 8.2e-48 194.9 274 42.0
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 8.2e-48 194.9 244 41.8
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 1.4e-47 194.1 275 42.9
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 1.8e-47 193.7 266 42.1
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 1.2e-46 191.0 238 45.4
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.0e-46 190.3 276 39.9
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 2.0e-46 190.3 250 45.6
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 2.6e-46 189.9 249 43.8
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 2.6e-46 189.9 268 41.8
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 3.5e-46 189.5 249 44.2
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 4.5e-46 189.1 231 45.5
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 5.9e-46 188.7 277 41.2
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 1.3e-45 187.6 265 42.6
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 5.0e-45 185.7 241 41.5
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.1e-44 184.5 255 40.8
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 2.5e-44 183.3 239 43.9
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 2.5e-44 183.3 250 43.6
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 1.4e-42 177.6 245 39.6
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 1.8e-42 177.2 266 40.2
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 4.0e-42 176.0 239 42.7
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 4.0e-42 176.0 253 40.3
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 6.8e-42 175.3 250 42.4
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 6.8e-42 175.3 246 41.9
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.2e-41 174.5 270 38.1
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 3.7e-40 169.5 239 40.6
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 6.3e-40 168.7 243 40.7
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.4e-39 167.5 237 41.4
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 9.1e-39 164.9 239 39.3
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.0e-38 163.7 231 41.6
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 4.5e-38 162.5 202 44.1
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 2.9e-37 159.8 245 40.8
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 4.2e-36 156.0 235 40.4
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 4.7e-35 152.5 216 45.4
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 8.8e-34 148.3 237 36.3
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 7.5e-33 145.2 226 38.5
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 2.8e-32 143.3 235 35.7
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 3.7e-32 142.9 235 35.7
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 3.7e-32 142.9 276 33.7
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 4.8e-32 142.5 126 60.3
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 1.1e-31 141.4 106 67.0
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 1.1e-31 141.4 157 52.9
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 1.1e-31 141.4 139 56.1
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 2.4e-31 140.2 118 59.3
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 9.1e-31 138.3 242 33.5
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 9.1e-31 138.3 139 53.2
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.0e-29 134.8 235 34.0
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 2.3e-29 133.7 234 37.6
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 2.9e-29 133.3 183 41.0
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-28 131.0 238 36.6
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 7.5e-25 118.6 236 33.5
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 2.4e-23 113.6 241 34.4
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.2e-22 111.3 203 37.4
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 4.5e-22 109.4 262 32.8
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.0e-21 108.2 250 31.6
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.9e-21 106.7 238 31.1
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 2.9e-21 106.7 149 45.6
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 1.9e-20 104.0 249 32.9
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 3.3e-20 103.2 237 30.4
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 8.0e-19 98.6 238 32.4
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 6.8e-18 95.5 233 31.8
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-16 90.9 230 33.9
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.9e-15 87.4 233 33.0
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 5.0e-13 79.3 268 28.7
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 7.3e-12 75.5 141 29.8
A02p01110 Brassica napus HOM05D005944 ORTHO05D007188 5.8e-09 65.9 33 90.9
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 4.9e-08 62.8 56 48.2
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 1.4e-07 61.2 155 29.0
BcaNung01940 Brassica carinata HOM05D005944 ORTHO05D007188 2.4e-07 60.5 50 64.0
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 4.6e-06 56.2 95 34.7
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 7.8e-06 55.5 37 51.4


User provided reference genes

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