Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.2e-42 176.0 84 100.0
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.2e-29 132.9 76 81.6
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 4.4e-29 131.0 79 79.7
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 4.4e-29 131.0 79 79.7
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 4.4e-29 131.0 79 79.7
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 4.4e-29 131.0 79 79.7
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 4.4e-29 131.0 79 79.7
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.7e-28 129.0 79 78.5
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.7e-28 127.9 79 78.5
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.1e-27 126.3 82 75.6
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 7.8e-26 120.2 76 73.7
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 2.3e-25 118.6 82 70.7
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.0e-25 118.2 76 71.1
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 8.6e-25 116.7 76 69.7
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 8.6e-25 116.7 76 71.1
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-24 115.9 76 71.1
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.3e-24 114.8 76 69.7
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.3e-24 114.8 76 69.7
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.3e-24 114.4 76 68.4
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 5.6e-24 114.0 76 71.1
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 9.5e-24 113.2 77 71.4
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 9.5e-24 113.2 76 73.7
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.2e-23 112.8 77 71.4
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.2e-23 112.8 79 68.4
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 4.7e-23 110.9 81 67.9
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 6.2e-23 110.5 87 64.4
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 6.2e-23 110.5 80 71.2
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 8.1e-23 110.2 80 67.5
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.4e-22 109.4 76 69.7
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.8e-22 109.0 81 67.9
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 3.1e-22 108.2 76 69.7
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.0e-22 107.8 77 68.8
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 5.2e-22 107.5 76 69.7
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 5.2e-22 107.5 86 62.8
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 5.2e-22 107.5 80 65.0
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 5.2e-22 107.5 76 69.7
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 6.8e-22 107.1 76 68.4
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.0e-21 105.5 81 65.4
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.6e-21 105.1 82 63.4
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.6e-21 105.1 76 69.7
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 2.6e-21 105.1 82 63.4
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 3.4e-21 104.8 75 65.3
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 4.4e-21 104.4 76 65.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 7.5e-21 103.6 82 62.2
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 7.5e-21 103.6 82 62.2
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 9.9e-21 103.2 76 65.8
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 9.9e-21 103.2 76 65.8
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.7e-20 102.4 76 67.1
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.7e-20 102.4 57 84.2
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.7e-20 102.4 57 82.5
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.2e-20 102.1 61 75.4
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 2.2e-20 102.1 82 62.2
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 2.2e-20 102.1 81 63.0
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.9e-20 101.7 80 65.0
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.7e-20 101.3 63 73.0
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 3.7e-20 101.3 76 65.8
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.7e-20 101.3 77 67.5
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.7e-20 101.3 77 67.5
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 3.7e-20 101.3 56 83.9
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.7e-20 101.3 76 61.8
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 3.7e-20 101.3 78 66.7
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.9e-20 100.9 76 65.8
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 4.9e-20 100.9 76 63.2
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 6.4e-20 100.5 81 64.2
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 8.3e-20 100.1 78 64.1
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.1e-19 99.8 81 63.0
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.1e-19 99.8 61 73.8
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.4e-19 99.4 55 81.8
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.4e-19 99.4 57 80.7
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.4e-19 99.4 57 80.7
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.4e-19 99.4 66 74.2
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.4e-19 99.4 56 82.1
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.4e-19 99.4 67 74.6
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.4e-19 99.4 78 66.7
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.4e-19 99.4 78 66.7
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.4e-19 99.4 82 64.6
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 1.4e-19 99.4 57 80.7
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.9e-19 99.0 77 66.2
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 1.9e-19 99.0 80 63.8
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.4e-19 98.6 82 61.0
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 3.2e-19 98.2 68 70.6
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 3.2e-19 98.2 68 70.6
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 3.2e-19 98.2 62 72.6
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 3.2e-19 98.2 76 61.8
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.2e-19 98.2 67 71.6
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 4.1e-19 97.8 57 78.9
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 4.1e-19 97.8 59 76.3
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 4.1e-19 97.8 78 65.4
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.4e-19 97.4 82 57.3
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 7.1e-19 97.1 65 72.3
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.2e-18 96.3 83 61.4
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 2.1e-18 95.5 57 78.9
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 2.7e-18 95.1 76 64.5
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 2.7e-18 95.1 53 79.2
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.5e-18 94.7 67 68.7
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.5e-18 94.7 81 58.0
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 4.6e-18 94.4 86 53.5
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 4.6e-18 94.4 79 60.8
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 6.0e-18 94.0 53 79.2
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 6.0e-18 94.0 79 59.5
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 7.8e-18 93.6 64 65.6
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 7.8e-18 93.6 76 60.5
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 7.8e-18 93.6 76 60.5
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.3e-17 92.8 77 62.3
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.7e-17 92.4 82 56.1
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.7e-17 92.4 76 61.8
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.7e-17 92.4 85 56.5
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.7e-17 92.4 85 56.5
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 2.3e-17 92.0 72 63.9
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 2.3e-17 92.0 72 61.1
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 3.0e-17 91.7 53 77.4
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.9e-16 89.0 70 58.6
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.9e-16 89.0 53 71.7
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.2e-15 86.3 65 64.6
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.1e-15 85.5 79 55.7
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 2.8e-15 85.1 61 65.6
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 3.6e-15 84.7 69 62.3
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 3.6e-15 84.7 75 58.7
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 4.7e-15 84.3 73 58.9
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 8.1e-15 83.6 52 67.3
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 5.2e-14 80.9 61 62.3
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 6.8e-14 80.5 73 57.5
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.5e-13 79.3 73 56.2
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 1.3e-12 76.3 61 59.0
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.9e-12 75.1 51 62.7
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.9e-12 75.1 53 69.8
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 4.9e-12 74.3 73 52.1
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.9e-11 72.4 54 66.7
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.4e-11 72.0 73 52.1
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 1.0e-09 66.6 48 60.4
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 2.3e-09 65.5 77 48.1
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.5e-08 62.8 48 60.4
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.8e-06 55.8 43 58.1


User provided reference genes

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