Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g17163 Brassica carinata HOM05D000812 ORTHO05D012268 1.2e-32 142.5 70 100.0
BolC2t11173H Brassica oleracea HOM05D000812 ORTHO05D012268 3.1e-28 127.9 78 88.5
C02p50860 Brassica napus HOM05D000812 ORTHO05D012268 2.0e-27 125.2 85 81.2
A04p26940 Brassica napus HOM05D000812 ORTHO05D000672 4.7e-24 114.0 78 79.5
C04p64330 Brassica napus HOM05D000812 ORTHO05D000672 4.7e-24 114.0 78 79.5
BraA04t18193Z Brassica rapa HOM05D000812 ORTHO05D000672 4.7e-24 114.0 78 79.5
BolC4t27920H Brassica oleracea HOM05D000812 ORTHO05D000672 1.0e-23 112.8 78 78.2
BcaC02g07707 Brassica carinata HOM05D000812 ORTHO05D000672 4.4e-22 107.5 78 78.2
BolC8t47212H Brassica oleracea HOM05D000812 ORTHO05D012268 4.4e-22 107.5 85 72.9
BcaC09g49365 Brassica carinata HOM05D000812 ORTHO05D012268 1.7e-21 105.5 81 75.3
C01p20910 Brassica napus HOM05D000812 ORTHO05D012268 2.8e-21 104.8 78 76.9
BcaC03g16338 Brassica carinata HOM05D000812 ORTHO05D012268 6.3e-21 103.6 77 76.6
C02p41630 Brassica napus HOM05D000812 ORTHO05D012268 6.3e-21 103.6 77 76.6
BolC3t20060H Brassica oleracea HOM05D000812 ORTHO05D012268 8.2e-21 103.2 85 71.8
BcaC09g50781 Brassica carinata HOM05D000812 ORTHO05D012268 1.1e-20 102.8 78 75.6
BolC1t02018H Brassica oleracea HOM05D000812 ORTHO05D012268 1.1e-20 102.8 78 75.6
Sp4g17730 Schrenkiella parvula HOM05D000812 ORTHO05D000672 2.4e-20 101.7 76 73.7
Thhalv10016444m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 3.4e-19 97.8 74 73.0
BcaC01g00295 Brassica carinata HOM05D000812 ORTHO05D012268 2.9e-18 94.7 78 71.8
C03p77990 Brassica napus HOM05D000812 ORTHO05D012268 3.2e-17 91.3 75 70.7
BcaB06g28846 Brassica carinata HOM05D000812 ORTHO05D000672 4.2e-17 90.9 79 68.4
BraA05t19962Z Brassica rapa HOM05D000812 ORTHO05D000672 8.8e-15 83.2 76 63.2
BolC4t22915H Brassica oleracea HOM05D000812 ORTHO05D000672 7.4e-14 80.1 76 59.2
BcaC02g11656 Brassica carinata HOM05D000812 ORTHO05D000672 1.7e-13 79.0 74 59.5
C04p12670 Brassica napus HOM05D000812 ORTHO05D000672 1.7e-13 79.0 74 59.5
A05p10220 Brassica napus HOM05D000812 ORTHO05D000672 2.8e-13 78.2 74 62.2
Aa31LG9G15500 Aethionema arabicum HOM05D000812 ORTHO05D000672 4.5e-11 70.9 73 58.9
CARHR129660 Cardamine hirsuta HOM05D000812 ORTHO05D012268 1.7e-10 68.9 62 59.7
AL4G31560 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 2.2e-10 68.6 62 64.5
AT2G35510 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 8.5e-10 66.6 62 64.5
Carub.0004s1720 Capsella rubella HOM05D000812 ORTHO05D000672 1.2e-08 62.8 62 59.7
Thhalv10007192m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 2.1e-08 62.0 64 60.9
Nitab4.5_0000556g0260 Nicotiana tabacum HOM05D000812 ORTHO05D000672 6.1e-08 60.5 74 45.9
BcaC05g27903 Brassica carinata HOM05D000812 ORTHO05D000672 1.0e-07 59.7 64 56.2
THA.LOC104798492 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 1.0e-07 59.7 61 57.4
AL1G46370 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 1.4e-07 59.3 64 56.2
COL.COLO4_16946 Corchorus olitorius HOM05D000812 ORTHO05D000672 1.8e-07 58.9 71 50.7
BcaB07g32898 Brassica carinata HOM05D000812 ORTHO05D000672 2.3e-07 58.5 65 56.9
BcaB03g13750 Brassica carinata HOM05D000812 ORTHO05D000672 3.0e-07 58.2 68 52.9
C05p39110 Brassica napus HOM05D000812 ORTHO05D000672 4.0e-07 57.8 61 57.4
BolC5t32647H Brassica oleracea HOM05D000812 ORTHO05D000672 4.0e-07 57.8 61 57.4
Sp1g27910 Schrenkiella parvula HOM05D000812 ORTHO05D000672 4.0e-07 57.8 64 57.8
Solyc08g005270.3 Solanum lycopersicum HOM05D000812 ORTHO05D000672 4.0e-07 57.8 74 47.3
Sopen08g001290 Solanum pennellii HOM05D000812 ORTHO05D000672 4.0e-07 57.8 74 47.3
BcaC05g27256 Brassica carinata HOM05D000812 ORTHO05D000672 5.2e-07 57.4 64 59.4
Potri.003G096700 Populus trichocarpa HOM05D000812 ORTHO05D000672 5.2e-07 57.4 65 53.8
Nitab4.5_0002778g0090 Nicotiana tabacum HOM05D000812 ORTHO05D000672 6.7e-07 57.0 71 45.1
THA.LOC104814416 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 8.8e-07 56.6 61 57.4
Aa31LG2G13770 Aethionema arabicum HOM05D000812 ORTHO05D000672 1.2e-06 56.2 61 57.4
AT1G32230 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 1.5e-06 55.8 64 54.7
C05p31640 Brassica napus HOM05D000812 ORTHO05D000672 2.0e-06 55.5 61 60.7
BolC5t31889H Brassica oleracea HOM05D000812 ORTHO05D000672 2.0e-06 55.5 61 60.7
CARHR031600 Cardamine hirsuta HOM05D000812 ORTHO05D000672 2.0e-06 55.5 64 56.2
Lj8A309G35 Lonicera japonica HOM05D000812 ORTHO05D000672 2.0e-06 55.5 61 54.1
Carub.0001s3056 Capsella rubella HOM05D000812 ORTHO05D000672 2.6e-06 55.1 64 54.7
A09p33940 Brassica napus HOM05D000812 ORTHO05D000672 3.3e-06 54.7 69 53.6
Potri.001G137200 Populus trichocarpa HOM05D000812 ORTHO05D000672 4.4e-06 54.3 65 50.8
BraA09t38941Z Brassica rapa HOM05D000812 ORTHO05D000672 5.7e-06 53.9 61 59.0
Cpa.g.sc208.10 Carica papaya HOM05D000812 ORTHO05D000672 5.7e-06 53.9 61 50.8
MSTRG.12175 Avicennia marina HOM05D000812 ORTHO05D000672 9.7e-06 53.1 76 44.7


User provided reference genes

Program Settings