Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 1.1e-44 183.0 96 100.0
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 1.1e-44 183.0 96 100.0
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 7.5e-41 170.2 96 96.9
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 2.0e-25 119.0 94 73.4
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 8.3e-24 113.6 72 88.9
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 1.1e-23 113.2 73 87.7
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 3.2e-23 111.7 73 86.3
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 3.2e-23 111.7 73 86.3
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 3.2e-23 111.7 73 86.3
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 3.2e-23 111.7 73 86.3
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 7.1e-23 110.5 73 84.9
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 2.7e-22 108.6 73 86.3
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 2.5e-20 102.1 72 80.6
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 3.3e-20 101.7 72 79.2
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 3.3e-20 101.7 72 79.2
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 7.3e-20 100.5 72 79.2
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 2.3e-18 95.5 88 65.9
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 3.1e-18 95.1 71 77.5
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 6.8e-18 94.0 88 65.9
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 6.8e-18 94.0 72 77.8
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 8.9e-18 93.6 71 78.9
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 8.9e-18 93.6 72 76.4
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 8.9e-18 93.6 85 65.9
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.2e-17 93.2 72 75.0
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 1.2e-17 93.2 72 75.0
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.5e-17 92.8 72 75.0
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 1.5e-17 92.8 72 75.0
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 2.6e-17 92.0 71 71.8
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 3.4e-17 91.7 88 63.6
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.4e-17 91.7 71 71.8
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 3.4e-17 91.7 70 72.9
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 4.4e-17 91.3 71 73.2
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 4.4e-17 91.3 71 69.0
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 4.4e-17 91.3 84 65.5
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 5.8e-17 90.9 86 64.0
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 7.6e-17 90.5 71 69.0
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 7.6e-17 90.5 87 60.9
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 9.9e-17 90.1 72 73.6
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 9.9e-17 90.1 71 70.4
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 9.9e-17 90.1 71 67.6
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.3e-16 89.7 72 73.6
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.3e-16 89.7 72 73.6
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.3e-16 89.7 72 73.6
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 1.7e-16 89.4 71 67.6
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 1.7e-16 89.4 71 67.6
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.7e-16 89.4 71 70.4
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 1.7e-16 89.4 72 73.6
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 1.7e-16 89.4 71 69.0
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 1.7e-16 89.4 71 69.0
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 2.2e-16 89.0 71 70.4
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 2.2e-16 89.0 71 70.4
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 2.2e-16 89.0 71 69.0
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 2.2e-16 89.0 71 66.2
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 2.9e-16 88.6 72 73.6
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.7e-16 88.2 72 72.2
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 3.7e-16 88.2 72 73.6
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 3.7e-16 88.2 73 72.6
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 4.9e-16 87.8 72 70.8
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 6.4e-16 87.4 71 69.0
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 8.3e-16 87.0 73 71.2
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 1.1e-15 86.7 71 67.6
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.9e-15 85.9 72 70.8
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 2.4e-15 85.5 73 72.6
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 3.2e-15 85.1 72 65.3
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 5.4e-15 84.3 64 78.1
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 5.4e-15 84.3 70 71.4
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 5.4e-15 84.3 70 71.4
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 7.1e-15 84.0 69 63.8
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 9.2e-15 83.6 71 66.2
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 9.2e-15 83.6 71 64.8
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 1.6e-14 82.8 72 66.7
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 2.1e-14 82.4 69 65.2
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 7.8e-14 80.5 58 77.6
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 7.8e-14 80.5 67 65.7
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.3e-13 79.7 69 62.3
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 5.1e-13 77.8 72 61.1
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 5.1e-13 77.8 71 63.4
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 6.6e-13 77.4 72 61.1
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 1.1e-12 76.6 72 59.7
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 9.6e-12 73.6 65 69.2
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 1.2e-11 73.2 132 42.4
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.8e-10 69.3 72 54.2
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.0e-10 68.2 59 67.8
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.0e-10 68.2 59 67.8
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.0e-10 68.2 59 67.8
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 4.0e-10 68.2 64 62.5
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.2e-09 66.6 73 58.9
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 1.5e-09 66.2 56 60.7
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 2.6e-09 65.5 60 56.7
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 3.4e-09 65.1 74 52.7
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 5.8e-09 64.3 73 54.8
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 2.9e-08 62.0 73 50.7
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 7.1e-07 57.4 56 53.6
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 9.3e-07 57.0 95 42.1
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 4.6e-06 54.7 51 54.9


User provided reference genes

Program Settings