Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 9.9e-87 323.6 179 100.0
BcaC01g03672 Brassica carinata HOM05D029489 ORTHO05D091160 2.4e-56 222.6 153 82.4
BcaC04g20962 Brassica carinata HOM05D029489 ORTHO05D090624 2.4e-56 222.6 153 82.4
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 1.4e-08 63.9 38 78.9
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 2.4e-08 63.2 38 76.3
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.4e-08 63.2 38 76.3
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.4e-08 63.2 38 76.3
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.4e-08 63.2 38 76.3
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.4e-08 63.2 38 76.3
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.4e-08 63.2 38 76.3
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.4e-08 63.2 38 76.3
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.4e-08 63.2 38 76.3
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 2.4e-08 63.2 38 76.3
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 4.1e-08 62.4 38 76.3
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 5.4e-08 62.0 38 73.7
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 7.0e-08 61.6 38 73.7
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 7.0e-08 61.6 38 73.7
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 9.1e-08 61.2 89 46.1
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 9.1e-08 61.2 47 59.6
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 9.1e-08 61.2 38 73.7
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.2e-07 60.8 89 46.1
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 1.2e-07 60.8 89 46.1
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 1.2e-07 60.8 44 63.6
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.2e-07 60.8 38 71.1
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 1.6e-07 60.5 47 61.7
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 1.6e-07 60.5 38 71.1
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 2.0e-07 60.1 88 43.2
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 2.0e-07 60.1 38 73.7
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 2.7e-07 59.7 38 73.7
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 2.7e-07 59.7 38 71.1
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 2.7e-07 59.7 38 71.1
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 2.7e-07 59.7 38 71.1
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 2.7e-07 59.7 38 71.1
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 2.7e-07 59.7 38 71.1
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 2.7e-07 59.7 38 71.1
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 3.5e-07 59.3 38 71.1
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 3.5e-07 59.3 38 71.1
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 4.5e-07 58.9 38 71.1
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 4.5e-07 58.9 38 71.1
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 4.5e-07 58.9 38 71.1
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 4.5e-07 58.9 38 71.1
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 5.9e-07 58.5 88 42.0
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 5.9e-07 58.5 88 42.0
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 5.9e-07 58.5 88 42.0
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 5.9e-07 58.5 88 42.0
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 5.9e-07 58.5 88 42.0
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 5.9e-07 58.5 88 42.0
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 71.1
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 71.1
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 71.1
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 5.9e-07 58.5 89 44.9
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 68.4
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 71.1
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 68.4
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 68.4
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 71.1
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 68.4
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 68.4
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 5.9e-07 58.5 38 68.4
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 7.7e-07 58.2 38 68.4
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 7.7e-07 58.2 38 68.4
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 7.7e-07 58.2 38 68.4
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 7.7e-07 58.2 38 68.4
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 7.7e-07 58.2 38 71.1
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 1.0e-06 57.8 38 71.1
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 1.0e-06 57.8 38 68.4
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 1.0e-06 57.8 38 68.4
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 1.0e-06 57.8 47 57.4
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 1.0e-06 57.8 38 68.4
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.0e-06 57.8 38 68.4
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.0e-06 57.8 38 68.4
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 1.0e-06 57.8 38 71.1
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 1.0e-06 57.8 80 42.5
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.3e-06 57.4 38 68.4
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 1.3e-06 57.4 38 68.4
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 1.7e-06 57.0 38 68.4
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 1.7e-06 57.0 38 68.4
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 1.7e-06 57.0 38 68.4
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 1.7e-06 57.0 38 68.4
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 1.7e-06 57.0 38 68.4
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 1.7e-06 57.0 38 68.4
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 1.7e-06 57.0 38 65.8
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 2.3e-06 56.6 38 68.4
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 2.3e-06 56.6 38 68.4
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 2.3e-06 56.6 38 68.4
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 2.9e-06 56.2 38 65.8
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 2.9e-06 56.2 38 65.8
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 2.9e-06 56.2 38 65.8
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 3.8e-06 55.8 38 65.8
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 3.8e-06 55.8 38 65.8
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 3.8e-06 55.8 79 43.0
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 3.8e-06 55.8 38 65.8
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 3.8e-06 55.8 47 57.4
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 3.8e-06 55.8 47 57.4
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 3.8e-06 55.8 38 63.2
BcaB08g35263 Brassica carinata HOM05D029489 ORTHO05D091038 5.0e-06 55.5 34 91.2
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 5.0e-06 55.5 38 63.2
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 6.6e-06 55.1 111 36.9
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 6.6e-06 55.1 38 63.2
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 6.6e-06 55.1 38 65.8
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 8.6e-06 54.7 38 65.8
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 8.6e-06 54.7 38 63.2
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 8.6e-06 54.7 89 40.4


User provided reference genes

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