Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15897 Brassica carinata HOM05D001732 ORTHO05D006715 2.6e-68 261.9 133 100.0
BcaC06g35903 Brassica carinata HOM05D001732 ORTHO05D006715 6.3e-54 214.2 149 78.5
BcaC07g41028 Brassica carinata HOM05D001732 ORTHO05D006715 1.1e-50 203.4 149 76.5
BcaB03g14675 Brassica carinata HOM05D001732 ORTHO05D006715 1.7e-43 179.5 171 63.2
C03p43150 Brassica napus HOM05D001732 ORTHO05D006715 1.7e-43 179.5 171 63.2
BolC3t16584H Brassica oleracea HOM05D001732 ORTHO05D006715 1.7e-43 179.5 171 63.2
BcaB03g14676 Brassica carinata HOM05D001732 ORTHO05D006715 1.1e-42 176.8 171 62.0
BraA03t12726Z Brassica rapa HOM05D001732 ORTHO05D006715 1.1e-42 176.8 171 61.4
A03p35490 Brassica napus HOM05D001732 ORTHO05D006715 7.2e-42 174.1 171 60.8
Sp3g06780 Schrenkiella parvula HOM05D001732 ORTHO05D006715 2.0e-39 166.0 168 58.9
CARHR082580 Cardamine hirsuta HOM05D001732 ORTHO05D006715 6.3e-38 161.0 172 57.0
Thhalv10021648m.g Eutrema salsugineum HOM05D001732 ORTHO05D006715 8.2e-38 160.6 168 57.7
Carub.0003s0744 Capsella rubella HOM05D001732 ORTHO05D006715 2.4e-37 159.1 173 56.1
AT3G07860 Arabidopsis thaliana HOM05D001732 ORTHO05D006715 1.0e-35 153.7 159 57.9
AL3G19230 Arabidopsis lyrata HOM05D001732 ORTHO05D006715 8.5e-35 150.6 159 57.2
BcaC04g20480 Brassica carinata HOM05D001732 ORTHO05D006715 7.2e-34 147.5 163 57.1
Aa31LG5G18420 Aethionema arabicum HOM05D001732 ORTHO05D006715 8.8e-32 140.6 165 52.7
C02p36660 Brassica napus HOM05D001732 ORTHO05D006715 1.5e-31 139.8 72 97.2
THA.LOC104809864 Tarenaya hassleriana HOM05D001732 ORTHO05D006715 8.3e-30 134.0 163 50.3
BcaB06g26153 Brassica carinata HOM05D001732 ORTHO05D006715 6.1e-25 117.9 71 87.3
C07p09830 Brassica napus HOM05D001732 ORTHO05D006715 8.8e-24 114.0 72 83.3
Ciclev10002649m.g Citrus clementina HOM05D001732 ORTHO05D006715 2.0e-23 112.8 168 42.3
Cpa.g.sc128.68 Carica papaya HOM05D001732 ORTHO05D006715 1.4e-21 106.7 168 40.5
Lalb_Chr19g0139341 Lupinus albus HOM05D001732 ORTHO05D006715 2.0e-20 102.8 165 37.6
Manes.02G226700 Manihot esculenta HOM05D001732 ORTHO05D006715 2.0e-20 102.8 161 42.2
Thecc.08G053200 Theobroma cacao HOM05D001732 ORTHO05D006715 3.5e-20 102.1 173 41.0
ECA233G1657 Erigeron canadensis HOM05D001732 ORTHO05D006715 5.9e-20 101.3 152 41.4
Eucgr.F03702 Eucalyptus grandis HOM05D001732 ORTHO05D006715 5.9e-20 101.3 168 39.9
CiPaw.04G051700 Carya illinoinensis HOM05D001732 ORTHO05D006715 1.3e-19 100.1 163 38.7
Cfa007703 Carpinus fangiana HOM05D001732 ORTHO05D006715 1.7e-19 99.8 164 39.0
Duzib116G0808 Durio zibethinus HOM05D001732 ORTHO05D006715 2.3e-19 99.4 173 39.3
PGR031G2961 Punica granatum HOM05D001732 ORTHO05D006715 2.3e-19 99.4 161 40.4
Actinidia37958 Actinidia chinensis HOM05D001732 ORTHO05D006715 1.1e-18 97.1 162 38.3
C09p43050 Brassica napus HOM05D014803 ORTHO05D017502 1.5e-18 96.7 87 65.5
BolC9t57175H Brassica oleracea HOM05D014803 ORTHO05D017502 1.5e-18 96.7 87 65.5
ClCG05G015370 Citrullus lanatus HOM05D001732 ORTHO05D006715 1.5e-18 96.7 160 38.1
Phvul.002G058300 Phaseolus vulgaris HOM05D001732 ORTHO05D006715 1.5e-18 96.7 152 40.1
Sed0004106 Sechium edule HOM05D001732 ORTHO05D006715 1.9e-18 96.3 152 40.1
Atru.chr13.201 Acer truncatum HOM05D001732 ORTHO05D006715 2.5e-18 95.9 161 36.6
Gohir.D02G000300 Gossypium hirsutum HOM05D001732 ORTHO05D006715 2.5e-18 95.9 168 38.1
Gorai.005G000800 Gossypium raimondii HOM05D001732 ORTHO05D006715 2.5e-18 95.9 168 38.1
VMungo1215G0739 Vigna mungo HOM05D001732 ORTHO05D006715 2.5e-18 95.9 152 40.8
COL.COLO4_26069 Corchorus olitorius HOM05D001732 ORTHO05D006715 3.3e-18 95.5 173 39.9
Peaxi162Scf00254g00422 Petunia axillaris HOM05D001732 ORTHO05D006715 3.3e-18 95.5 143 37.8
Gohir.1Z049315 Gossypium hirsutum HOM05D001732 ORTHO05D006715 4.2e-18 95.1 168 38.1
Gohir.A01G232000 Gossypium hirsutum HOM05D001732 ORTHO05D006715 4.2e-18 95.1 168 38.1
Gohir.D08G006900 Gossypium hirsutum HOM05D001732 ORTHO05D006715 4.2e-18 95.1 168 38.1
Gorai.006G274900 Gossypium raimondii HOM05D001732 ORTHO05D006715 4.2e-18 95.1 168 38.1
arahy.Tifrunner.gnm1.ann1.60EZUA Arachis hypogaea HOM05D001732 ORTHO05D006715 5.5e-18 94.7 166 36.7
arahy.Tifrunner.gnm1.ann1.ND8TJ1 Arachis hypogaea HOM05D001732 ORTHO05D006715 5.5e-18 94.7 166 36.7
CsaV3_4G036990 Cucumis sativus L. HOM05D001732 ORTHO05D006715 5.5e-18 94.7 160 37.5
Gorai.007G379800 Gossypium raimondii HOM05D001732 ORTHO05D006715 7.2e-18 94.4 168 38.1
PGSC0003DMG402016244 Solanum tuberosum HOM05D001732 ORTHO05D006715 7.2e-18 94.4 158 36.1
EL10Ac1g02055 Beta vulgaris HOM05D001732 ORTHO05D006715 1.2e-17 93.6 163 38.0
Lj3g0013314 Lotus japonicus HOM05D001732 ORTHO05D006715 1.2e-17 93.6 164 38.4
TWI12G0398 Tripterygium wilfordii HOM05D001732 ORTHO05D006715 1.6e-17 93.2 159 38.4
CSS0027369 Camellia sinensis var. sinensis HOM05D001732 ORTHO05D006715 2.1e-17 92.8 161 36.0
CAN.G691.13 Capsicum annuum HOM05D001732 ORTHO05D006715 2.1e-17 92.8 158 37.3
Glyma.11G102700 Glycine max HOM05D001732 ORTHO05D006715 2.8e-17 92.4 152 38.8
Glyma.11G102900 Glycine max HOM05D001732 ORTHO05D006715 2.8e-17 92.4 152 38.8
Solyc11g008730.2 Solanum lycopersicum HOM05D001732 ORTHO05D006715 2.8e-17 92.4 158 36.1
Sopen11g004510 Solanum pennellii HOM05D001732 ORTHO05D006715 2.8e-17 92.4 158 36.1
GSVIVG01008724001 Vitis vinifera HOM05D001732 ORTHO05D006715 2.8e-17 92.4 161 35.4
RcHm_v2.0_Chr6g0303781 Rosa chinensis HOM05D001732 ORTHO05D006715 3.6e-17 92.0 152 40.1
Medtr4g074450 Medicago truncatula HOM05D001732 ORTHO05D006715 4.7e-17 91.7 150 40.0
Gohir.A11G200232 Gossypium hirsutum HOM05D001732 ORTHO05D006715 6.1e-17 91.3 173 37.6
Gohir.D04G192600 Gossypium hirsutum HOM05D001732 ORTHO05D006715 6.1e-17 91.3 147 40.1
PSO170G3407 Papaver somniferum HOM05D001732 ORTHO05D006715 6.1e-17 91.3 153 39.9
PSO210G2512 Papaver somniferum HOM05D001732 ORTHO05D006715 8.0e-17 90.9 153 39.2
Gohir.1Z049638 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.0e-16 90.5 168 36.9
Gohir.D08G275600 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.0e-16 90.5 168 36.9
MSTRG.2679 Avicennia marina HOM05D001732 ORTHO05D006715 1.4e-16 90.1 152 35.5
DCAR_016903 Daucus carota HOM05D001732 ORTHO05D006715 1.4e-16 90.1 164 37.2
Gohir.1Z049365 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.4e-16 90.1 167 37.7
Gohir.A08G000020 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.4e-16 90.1 167 37.7
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 2.3e-16 89.4 164 35.4
Nitab4.5_0000743g0150 Nicotiana tabacum HOM05D001732 ORTHO05D006715 2.3e-16 89.4 158 34.8
TPR.G32336 Trifolium pratense HOM05D001732 ORTHO05D006715 2.3e-16 89.4 159 37.7
Sabra02G0012000 Salix brachista HOM05D001732 ORTHO05D006715 3.0e-16 89.0 161 37.3
TWI77G0460 Tripterygium wilfordii HOM05D001732 ORTHO05D006715 3.0e-16 89.0 155 38.1
Aqoxy6G01904 Aquilegia oxysepala HOM05D001732 ORTHO05D006715 4.0e-16 88.6 159 36.5
CDE08G0347 Ceratophyllum demersum HOM05D001732 ORTHO05D006715 4.0e-16 88.6 146 38.4
QL12p036301 Quercus lobata HOM05D001732 ORTHO05D006715 4.0e-16 88.6 152 38.2
SalBow7G3452 Salvia bowleyana HOM05D001732 ORTHO05D006715 4.0e-16 88.6 164 35.4
FAN27G1331 Fragaria x ananassa HOM05D001732 ORTHO05D006715 5.2e-16 88.2 161 36.6
Gohir.A11G330000 Gossypium hirsutum HOM05D001732 ORTHO05D006715 6.8e-16 87.8 154 37.7
Ca_03030_v3 Cicer arietinum L. HOM05D001732 ORTHO05D006715 8.9e-16 87.4 163 36.8
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 8.9e-16 87.4 173 38.2
Gohir.A13G000800 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.2e-15 87.0 167 36.5
MD08G1006500 Malus domestica HOM05D001732 ORTHO05D006715 1.5e-15 86.7 153 35.3
Nitab4.5_0005243g0020 Nicotiana tabacum HOM05D001732 ORTHO05D006715 1.5e-15 86.7 158 34.2
Potri.002G015002 Populus trichocarpa HOM05D001732 ORTHO05D006715 1.5e-15 86.7 161 36.6
CANSAT25G2855 Cannabis sativa HOM05D001732 ORTHO05D006715 2.0e-15 86.3 141 39.7
Cc10_g01020 Coffea canephora HOM05D001732 ORTHO05D006715 3.4e-15 85.5 152 35.5
Oeu017913.1 Olea europaea HOM05D001732 ORTHO05D006715 3.4e-15 85.5 144 36.8
Gorai.004G294300 Gossypium raimondii HOM05D001732 ORTHO05D006715 1.3e-14 83.6 135 41.5
Os04g0663500 Oryza sativa ssp. japonica HOM05D001732 ORTHO05D006715 1.7e-14 83.2 154 35.1
unitig_0.g2094 Utricularia gibba HOM05D000560 ORTHO05D000417 2.2e-14 82.8 147 36.1
Gohir.D11G222700 Gossypium hirsutum HOM05D001732 ORTHO05D006715 4.9e-14 81.6 169 35.5
TAR625G1178 Trochodendron aralioides HOM05D001732 ORTHO05D006715 4.9e-14 81.6 152 33.6
Zm00001eb067320 Zea mays HOM05D001732 ORTHO05D006715 4.9e-14 81.6 154 34.4
SGA_v2.0_scaffold145G36108 Striga asiatica HOM05D001732 ORTHO05D006715 6.3e-14 81.3 159 32.1
Aqoxy2G01192 Aquilegia oxysepala HOM05D001732 ORTHO05D006715 8.3e-14 80.9 143 39.2
Nn3g18505 Nelumbo nucifera HOM05D001732 ORTHO05D006715 4.1e-13 78.6 67 56.7
SGA_v2.0_scaffold236G43748 Striga asiatica HOM05D001732 ORTHO05D006715 5.4e-13 78.2 167 29.9
Haze_14372 Corylus avellana HOM05D001732 ORTHO05D006715 9.2e-13 77.4 95 48.4
Lsat_1_v5_gn_8_28861 Lactuca sativa HOM05D001732 ORTHO05D006715 2.0e-12 76.3 83 49.4
Dinv24804 Davidia involucrata HOM05D001732 ORTHO05D006715 2.7e-12 75.9 83 49.4
Migut.N02762 Erythranthe guttata HOM05D001732 ORTHO05D006715 2.7e-12 75.9 152 32.9
Rhsim07G0251800 Rhododendron simsii HOM05D001732 ORTHO05D006715 1.3e-11 73.6 83 49.4
AUR62036745 Chenopodium quinoa HOM05D001732 ORTHO05D006715 1.7e-11 73.2 89 49.4
Pp3c18_13370 Physcomitrium patens HOM05D001732 ORTHO05D006715 1.7e-11 73.2 159 32.1
AUR62013855 Chenopodium quinoa HOM05D001732 ORTHO05D006715 2.3e-11 72.8 89 48.3
HPP92_015011 Vanilla planifolia HOM05D001732 ORTHO05D006715 2.3e-11 72.8 153 32.7
FAN20G1153 Fragaria x ananassa HOM05D001732 ORTHO05D006715 6.6e-11 71.2 92 44.6
vmacro04384 Vaccinium macrocarpon HOM05D001732 ORTHO05D006715 6.6e-11 71.2 83 45.8
AagrBONN_evm.TU.Sc2ySwM_340.241 Anthoceros agrestis HOM05D001732 ORTHO05D006715 1.1e-10 70.5 146 32.9
SHI43126 Sapria himalayana HOM05D001732 ORTHO05D006715 1.5e-10 70.1 72 47.2
CSS0031494 Camellia sinensis var. sinensis HOM05D001732 ORTHO05D006715 2.5e-10 69.3 83 45.8
ATR0661G291 Amborella trichopoda HOM05D001732 ORTHO05D006715 9.5e-10 67.4 92 44.6
Manes.02G226801 Manihot esculenta HOM05D001732 ORTHO05D006715 9.5e-10 67.4 75 52.0
Psat6g203000 Pisum sativum HOM05D001732 ORTHO05D006715 9.5e-10 67.4 89 44.9
Prupe.1G358400 Prunus persica HOM05D001732 ORTHO05D006715 9.5e-10 67.4 83 43.4
Gorai.009G456200 Gossypium raimondii HOM05D001732 ORTHO05D006715 2.1e-09 66.2 91 41.8
Gorai.007G240300 Gossypium raimondii HOM05D001732 ORTHO05D006715 2.8e-09 65.9 104 41.3
MBI08_g46842_MAGBIO Magnolia biondii HOM05D001732 ORTHO05D006715 2.8e-09 65.9 55 50.9
Glyma.12G027967 Glycine max HOM05D001732 ORTHO05D006715 4.7e-09 65.1 53 56.6
MBI08_g43115_MAGBIO Magnolia biondii HOM05D001732 ORTHO05D006715 6.1e-09 64.7 56 48.2
FAN15G0072 Fragaria x ananassa HOM05D001732 ORTHO05D006715 8.0e-09 64.3 56 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2831 Anthoceros agrestis HOM05D001732 ORTHO05D006715 1.4e-08 63.5 76 43.4
MBI08_g41940_MAGBIO Magnolia biondii HOM05D001732 ORTHO05D006715 1.4e-08 63.5 53 50.9
Mapoly0095s0017 Marchantia polymorpha HOM05D001732 ORTHO05D006715 3.1e-08 62.4 145 29.7
Nn5g30866 Nelumbo nucifera HOM05D001732 ORTHO05D006715 1.2e-07 60.5 157 31.8
HanXRQChr08g0215241 Helianthus annuus HOM05D001732 ORTHO05D006715 3.4e-07 58.9 77 44.2
Actinidia29773 Actinidia chinensis HOM05D001732 ORTHO05D006715 7.5e-07 57.8 95 38.9
CBR_g49713 Chara braunii HOM05D006523 ORTHO05D008212 2.9e-06 55.8 140 27.1


User provided reference genes

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