Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 1.9e-248 862.1 432 100.0
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 5.4e-248 860.5 432 99.8
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 2.1e-247 858.6 432 99.5
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 3.0e-246 854.7 432 98.8
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 9.6e-237 823.2 431 95.8
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 1.3e-225 786.2 423 92.7
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 2.9e-225 785.0 432 90.7
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 1.6e-215 752.7 427 89.0
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 7.9e-215 750.4 423 86.5
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 5.1e-214 747.7 423 87.9
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 9.7e-213 743.4 423 87.7
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 7.0e-195 684.1 425 80.7
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 2.9e-193 678.7 435 77.9
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 2.0e-181 639.4 429 73.9
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 1.3e-180 636.7 433 73.4
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 5.3e-179 631.3 433 72.3
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 1.6e-178 629.8 419 74.2
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 7.7e-178 627.5 424 73.3
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 1.5e-176 623.2 421 73.6
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 2.5e-176 622.5 421 73.4
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 3.2e-176 622.1 427 72.1
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 9.4e-176 620.5 421 74.3
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 1.2e-175 620.2 428 72.9
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 1.6e-175 619.8 433 70.7
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 2.1e-175 619.4 425 72.0
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 2.1e-175 619.4 428 72.7
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 3.6e-175 618.6 433 71.1
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.4e-174 616.7 425 71.8
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 1.8e-174 616.3 428 72.2
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 2.3e-174 615.9 454 69.8
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 4.0e-174 615.1 422 73.5
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 1.2e-173 613.6 422 72.5
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 4.4e-173 611.7 433 69.7
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 5.7e-173 611.3 423 71.4
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 5.7e-173 611.3 422 72.0
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 7.5e-173 610.9 421 73.2
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 7.5e-173 610.9 427 72.4
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 9.8e-173 610.5 422 71.8
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 2.2e-172 609.4 428 71.5
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 2.8e-172 609.0 428 71.3
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 4.8e-172 608.2 422 72.7
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 6.3e-172 607.8 433 69.3
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 1.8e-171 606.3 423 72.1
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 1.8e-171 606.3 429 70.4
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 4.1e-171 605.1 428 71.3
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 7.0e-171 604.4 428 70.6
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 9.1e-171 604.0 421 71.5
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 3.5e-170 602.1 428 70.8
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 1.3e-169 600.1 429 70.6
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 1.3e-169 600.1 428 70.6
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 3.8e-169 598.6 423 69.7
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 5.0e-169 598.2 428 69.2
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 6.6e-169 597.8 424 69.8
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 8.6e-169 597.4 424 70.0
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 1.9e-168 596.3 423 70.9
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 1.9e-168 596.3 461 67.0
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 3.3e-168 595.5 427 70.0
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 9.5e-168 594.0 424 69.8
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 1.2e-167 593.6 424 69.6
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 1.6e-167 593.2 439 69.0
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 1.6e-167 593.2 431 70.3
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 2.8e-167 592.4 427 69.8
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 8.0e-167 590.9 421 71.0
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 1.0e-166 590.5 433 68.8
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 1.0e-166 590.5 433 68.8
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 1.0e-166 590.5 422 68.5
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 1.0e-166 590.5 424 69.1
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 4.0e-166 588.6 431 69.8
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 1.2e-165 587.0 416 70.7
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.3e-164 583.6 447 65.5
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 3.7e-164 582.0 425 69.2
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 3.7e-164 582.0 423 68.8
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 1.4e-163 580.1 452 65.9
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 2.7e-162 575.9 471 62.6
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 3.5e-162 575.5 425 67.5
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 5.9e-162 574.7 424 66.0
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 2.9e-161 572.4 428 67.8
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 3.9e-161 572.0 423 69.3
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 8.6e-161 570.9 436 66.3
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 1.9e-160 569.7 425 65.4
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 1.9e-160 569.7 425 67.3
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 6.1e-159 564.7 422 66.1
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 8.0e-159 564.3 532 57.3
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 1.4e-158 563.5 422 66.1
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 1.4e-158 563.5 424 65.8
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 1.4e-158 563.5 424 65.8
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 4.0e-158 562.0 432 70.6
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 6.8e-158 561.2 421 64.1
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 4.4e-157 558.5 429 64.1
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 3.7e-156 555.4 421 64.1
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 1.9e-155 553.1 423 64.3
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 3.2e-155 552.4 421 66.7
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 7.8e-154 547.7 422 66.6
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.0e-153 547.4 422 66.6
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 1.7e-153 546.6 422 66.1
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 5.0e-153 545.0 422 66.4
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 1.9e-152 543.1 421 65.3
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 2.6e-149 532.7 427 61.8
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 1.2e-143 513.8 438 60.3
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 2.8e-143 512.7 418 61.2
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 4.0e-142 508.8 428 58.2
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 3.7e-140 502.3 422 60.2
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 1.6e-138 496.9 337 74.8
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 8.6e-137 491.1 424 58.0
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 1.9e-136 490.0 431 57.5
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 4.6e-130 468.8 422 58.3
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 6.0e-130 468.4 443 59.1
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 7.8e-130 468.0 358 65.1
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 1.8e-126 456.8 425 54.6
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 3.1e-126 456.1 426 53.1
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 9.9e-125 451.1 298 73.5
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 2.8e-119 433.0 351 63.2
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 9.9e-117 424.5 426 56.6
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 9.3e-115 417.9 426 48.8
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 2.1e-114 416.8 264 76.1
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 4.2e-107 392.5 258 74.4
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 4.8e-103 379.0 291 70.8
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 1.8e-86 323.9 194 81.4
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 4.5e-85 319.3 427 41.7
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 1.8e-70 270.8 235 55.3
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 2.7e-58 230.3 185 65.9
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 1.2e-50 204.9 102 99.0
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 7.0e-38 162.5 139 61.2
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 2.7e-29 134.0 91 65.9
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 1.5e-27 128.3 96 63.5
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 1.2e-24 118.6 89 59.6
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 1.2e-13 82.0 353 23.2
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 5.3e-09 66.6 90 45.6
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 2.4e-06 57.8 35 68.6


User provided reference genes

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