Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14850 Brassica carinata HOM05D000125 ORTHO05D009513 2.2e-84 315.5 146 100.0
A02p14340 Brassica napus HOM05D000125 ORTHO05D009513 2.6e-69 265.4 122 96.7
BcaB05g24296 Brassica carinata HOM05D000125 ORTHO05D009513 3.9e-65 251.5 126 84.9
BcaB05g24297 Brassica carinata HOM05D000125 ORTHO05D009513 3.9e-65 251.5 126 84.9
BcaC03g14851 Brassica carinata HOM05D000125 ORTHO05D009513 1.3e-55 219.9 107 95.3
AL4G11480 Arabidopsis lyrata HOM05D000125 ORTHO05D009513 4.5e-45 184.9 122 63.9
AL4G11120 Arabidopsis lyrata HOM05D000125 ORTHO05D009513 3.2e-43 178.7 125 60.8
AL4G11160 Arabidopsis lyrata HOM05D000125 ORTHO05D009513 3.2e-43 178.7 124 62.1
Thhalv10000096m.g Eutrema salsugineum HOM05D000125 ORTHO05D009513 5.5e-43 177.9 123 65.0
AT2G21830 Arabidopsis thaliana HOM05D000125 ORTHO05D009513 3.9e-41 171.8 125 61.6
AT2G21850 Arabidopsis thaliana HOM05D000125 ORTHO05D009513 8.7e-41 170.6 123 58.5
Carub.0002s0455 Capsella rubella HOM05D000043 ORTHO05D009513 1.1e-40 170.2 119 61.3
Thhalv10016296m.g Eutrema salsugineum HOM05D000125 ORTHO05D009513 1.9e-40 169.5 125 58.4
Thhalv10016584m.g Eutrema salsugineum HOM05D000125 ORTHO05D009513 1.9e-40 169.5 125 58.4
AL4G11140 Arabidopsis lyrata HOM05D000125 ORTHO05D009513 3.3e-40 168.7 122 60.7
AT2G21840 Arabidopsis thaliana HOM05D000125 ORTHO05D009513 5.7e-40 167.9 125 56.0
Thhalv10000100m.g Eutrema salsugineum HOM05D000125 ORTHO05D009513 5.7e-40 167.9 126 57.1
Thhalv10017722m.g Eutrema salsugineum HOM05D000125 ORTHO05D009513 9.7e-40 167.2 125 57.6
AL4G11150 Arabidopsis lyrata HOM05D000125 ORTHO05D009513 1.6e-39 166.4 125 56.8
CARHR123830 Cardamine hirsuta HOM05D000125 ORTHO05D009513 2.2e-39 166.0 125 56.8
BolC2t08462H Brassica oleracea HOM05D000125 ORTHO05D009513 6.3e-39 164.5 114 71.9
CARHR113300 Cardamine hirsuta HOM05D000125 ORTHO05D009513 6.3e-39 164.5 122 58.2
CARHR123760 Cardamine hirsuta HOM05D000125 ORTHO05D009513 6.3e-39 164.5 125 56.0
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 2.4e-38 162.5 121 59.5
Carub.0004s0087 Capsella rubella HOM05D000125 ORTHO05D009513 4.1e-38 161.8 122 54.9
CARHR113470 Cardamine hirsuta HOM05D000125 ORTHO05D009513 4.2e-35 151.8 121 57.0
CARHR123840 Cardamine hirsuta HOM05D000125 ORTHO05D009513 2.6e-29 132.5 103 53.4
Carub.0004s0088 Capsella rubella HOM05D000125 ORTHO05D009513 1.2e-26 123.6 83 57.8
THA.LOC104814999 Tarenaya hassleriana HOM05D000125 ORTHO05D009513 1.3e-20 103.6 122 41.8
CARHR123790 Cardamine hirsuta HOM05D000125 ORTHO05D009513 3.2e-11 72.4 135 33.3
BraA02t06495Z Brassica rapa HOM05D000125 ORTHO05D009513 6.1e-10 68.2 29 100.0
CANSAT11G2595 Cannabis sativa HOM05D000125 ORTHO05D000807 3.0e-09 65.9 131 29.8
PGR004G2726 Punica granatum HOM05D000125 ORTHO05D000120 2.6e-08 62.8 126 31.0
COL.COLO4_29327 Corchorus olitorius HOM05D000125 ORTHO05D000120 5.7e-08 61.6 137 27.0
Gorai.005G037300 Gossypium raimondii HOM05D000125 ORTHO05D000120 1.3e-07 60.5 131 27.5
Actinidia31114 Actinidia chinensis HOM05D000125 ORTHO05D011744 2.2e-07 59.7 127 31.5
CiPaw.06G031800 Carya illinoinensis HOM05D000125 ORTHO05D010101 2.2e-07 59.7 132 27.3
HanXRQChr09g0261051 Helianthus annuus HOM05D000125 ORTHO05D000120 3.7e-07 58.9 123 26.0
QL09p024167 Quercus lobata HOM05D000125 ORTHO05D000120 3.7e-07 58.9 126 30.2
Duzib128G1648 Durio zibethinus HOM05D000125 ORTHO05D009513 4.8e-07 58.5 125 33.6
Potri.004G172400 Populus trichocarpa HOM05D000125 ORTHO05D000120 4.8e-07 58.5 124 27.4
QL93p0209_0024 Quercus lobata HOM05D000125 ORTHO05D000120 4.8e-07 58.5 134 29.1
BolC1t05426H Brassica oleracea HOM05D000125 ORTHO05D000120 8.2e-07 57.8 137 29.9
CANSAT21G1703 Cannabis sativa HOM05D000125 ORTHO05D000120 8.2e-07 57.8 123 29.3
A03p59170 Brassica napus HOM05D000125 ORTHO05D000120 1.4e-06 57.0 121 28.1
BraA03t14976Z Brassica rapa HOM05D000125 ORTHO05D000120 1.4e-06 57.0 121 28.1
Carub.0003s3169 Capsella rubella HOM05D000125 ORTHO05D000120 1.4e-06 57.0 148 29.1
BcaB04g18590 Brassica carinata HOM05D000125 ORTHO05D000120 1.8e-06 56.6 155 29.7
CSS0035777 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D000120 1.8e-06 56.6 133 30.1
Gohir.D02G033350 Gossypium hirsutum HOM05D000125 ORTHO05D000120 1.8e-06 56.6 130 26.9
AT5G37620 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 3.1e-06 55.8 130 27.7
Carub.0006s3032 Capsella rubella HOM05D000125 ORTHO05D000120 3.1e-06 55.8 125 32.0
Nitab4.5_0013753g0010 Nicotiana tabacum HOM05D000125 ORTHO05D000807 3.1e-06 55.8 137 27.0
Potri.012G140133 Populus trichocarpa HOM05D000125 ORTHO05D000807 3.1e-06 55.8 122 30.3
Thecc.10G171000 Theobroma cacao HOM05D000125 ORTHO05D009513 4.1e-06 55.5 138 33.3
TWI36G1125 Tripterygium wilfordii HOM05D007512 ORTHO05D009524 4.1e-06 55.5 120 30.8
CSS0047661 Camellia sinensis var. sinensis HOM05D009378 ORTHO05D010101 7.0e-06 54.7 121 30.6
Ciclev10013637m.g Citrus clementina HOM05D000125 ORTHO05D000807 7.0e-06 54.7 123 26.0
Thhalv10000829m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 7.0e-06 54.7 140 27.1
HanXRQChr09g0267471 Helianthus annuus HOM05D000125 ORTHO05D000120 7.0e-06 54.7 126 27.8
SalBow2G2492 Salvia bowleyana HOM05D000125 ORTHO05D000120 7.0e-06 54.7 134 29.9
Haze_09061 Corylus avellana HOM05D000125 ORTHO05D000120 9.1e-06 54.3 157 30.6


User provided reference genes

Program Settings