Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 3.0e-75 285.0 140 100.0
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 8.1e-20 100.9 48 100.0
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.4e-19 100.1 48 97.9
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 3.1e-19 99.0 48 95.8
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 6.9e-19 97.8 48 95.8
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 6.9e-19 97.8 48 95.8
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 6.9e-19 97.8 48 95.8
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 6.9e-19 97.8 48 95.8
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 9.0e-19 97.4 48 95.8
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.2e-18 97.1 48 93.8
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 4.5e-18 95.1 48 91.7
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 5.8e-18 94.7 48 91.7
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 5.8e-18 94.7 48 91.7
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 5.8e-18 94.7 48 91.7
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 5.8e-18 94.7 48 93.8
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 5.8e-18 94.7 48 93.8
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 1.7e-17 93.2 48 87.5
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 2.9e-17 92.4 48 89.6
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 5.5e-16 88.2 48 87.5
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 7.1e-16 87.8 48 83.3
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 9.3e-16 87.4 48 81.2
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 4.6e-15 85.1 48 81.2
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 5.1e-14 81.6 56 67.9
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 8.7e-14 80.9 48 75.0
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 2.5e-13 79.3 48 72.9
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 2.5e-13 79.3 56 66.1
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 2.5e-13 79.3 56 67.9
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 4.3e-13 78.6 48 75.0
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 4.3e-13 78.6 48 72.9
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 5.7e-13 78.2 56 67.9
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.7e-13 78.2 56 67.9
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.7e-13 78.2 56 67.9
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.7e-13 78.2 58 65.5
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.7e-13 78.2 56 67.9
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.7e-13 78.2 56 67.9
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 7.4e-13 77.8 48 72.9
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 7.4e-13 77.8 48 72.9
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.6e-12 76.6 48 68.8
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.6e-12 76.6 48 68.8
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.1e-12 76.3 48 70.8
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 2.1e-12 76.3 48 72.9
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 3.7e-12 75.5 57 63.2
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.7e-12 75.5 48 70.8
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 4.8e-12 75.1 48 70.8
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 4.8e-12 75.1 49 73.5
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 1.4e-11 73.6 48 68.8
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 1.8e-11 73.2 58 67.2
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 2.4e-11 72.8 58 63.8
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 2.4e-11 72.8 58 67.2
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 4.1e-11 72.0 58 65.5
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 6.9e-11 71.2 57 64.9
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 6.9e-11 71.2 58 65.5
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.5e-10 70.1 48 68.8
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 1.5e-10 70.1 48 70.8
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.5e-10 70.1 49 71.4
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 2.0e-10 69.7 56 58.9
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 2.0e-10 69.7 56 58.9
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 2.0e-10 69.7 58 65.5
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 3.4e-10 68.9 50 70.0
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 4.5e-10 68.6 49 67.3
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 4.5e-10 68.6 56 60.7
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 5.9e-10 68.2 49 69.4
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 5.9e-10 68.2 58 62.1
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 7.6e-10 67.8 56 57.1
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 7.6e-10 67.8 56 66.1
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 1.0e-09 67.4 50 68.0
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.3e-09 67.0 49 67.3
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 1.3e-09 67.0 49 67.3
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 1.3e-09 67.0 49 67.3
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.7e-09 66.6 48 70.8
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 2.2e-09 66.2 61 55.7
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 2.2e-09 66.2 58 62.1
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 3.8e-09 65.5 48 66.7
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 6.5e-09 64.7 56 57.1
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 8.5e-09 64.3 52 59.6
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 1.1e-08 63.9 48 64.6
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 1.1e-08 63.9 49 65.3
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.1e-08 63.9 58 60.3
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 1.1e-08 63.9 58 60.3
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.4e-08 63.5 58 60.3
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 1.9e-08 63.2 54 57.4
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 2.5e-08 62.8 49 65.3
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 2.5e-08 62.8 57 50.9
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 2.5e-08 62.8 56 55.4
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 3.2e-08 62.4 49 63.3
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 3.2e-08 62.4 58 60.3
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 3.2e-08 62.4 49 63.3
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 4.2e-08 62.0 58 60.3
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 4.2e-08 62.0 49 61.2
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 5.5e-08 61.6 48 64.6
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 5.5e-08 61.6 49 61.2
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 7.2e-08 61.2 54 55.6
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 7.2e-08 61.2 58 56.9
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 9.3e-08 60.8 49 61.2
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 1.2e-07 60.5 49 61.2
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 2.1e-07 59.7 49 61.2
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 2.7e-07 59.3 59 54.2
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 2.7e-07 59.3 49 59.2
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 4.6e-07 58.5 58 55.2
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 4.6e-07 58.5 61 49.2
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 4.6e-07 58.5 49 57.1
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 6.1e-07 58.2 49 55.1
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 7.9e-07 57.8 53 54.7
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 1.8e-06 56.6 49 57.1
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 1.8e-06 56.6 49 57.1
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 2.3e-06 56.2 58 51.7
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 5.1e-06 55.1 49 55.1
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 5.1e-06 55.1 49 55.1
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 8.7e-06 54.3 49 53.1
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 8.7e-06 54.3 49 55.1


User provided reference genes

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