Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 2.0e-208 728.8 358 100.0
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 1.1e-190 669.8 417 83.0
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 5.2e-188 661.0 417 82.0
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 3.7e-186 654.8 417 80.8
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 2.3e-175 619.0 417 76.0
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 7.3e-166 587.4 417 73.4
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 7.4e-158 560.8 420 69.8
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 1.2e-155 553.5 419 70.2
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 9.9e-155 550.4 418 69.1
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 6.4e-154 547.7 418 69.1
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 1.0e-127 460.7 394 65.7
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 5.5e-121 438.3 431 55.5
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 5.9e-107 391.7 269 70.3
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 4.7e-96 355.5 420 49.0
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.8e-87 327.0 414 45.4
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 6.6e-82 308.5 422 43.1
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 4.7e-80 302.4 418 42.8
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 8.3e-77 291.6 436 40.8
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 3.2e-76 289.7 435 39.5
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 9.2e-76 288.1 427 42.4
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.2e-75 287.7 424 41.3
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 2.1e-75 287.0 426 43.0
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 7.8e-75 285.0 427 42.2
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 8.6e-74 281.6 428 40.7
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 1.1e-73 281.2 417 39.3
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.1e-73 281.2 429 39.4
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 2.5e-73 280.0 418 39.2
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 5.6e-73 278.9 422 40.8
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 5.6e-73 278.9 436 38.3
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 8.1e-72 275.0 426 37.6
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 8.1e-72 275.0 441 39.2
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.4e-71 274.2 423 39.2
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 3.1e-71 273.1 415 39.0
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 2.0e-70 270.4 428 41.6
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 4.4e-70 269.2 430 39.3
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 2.9e-69 266.5 427 40.7
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.4e-68 264.2 424 37.5
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 2.7e-67 260.0 429 38.2
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 4.6e-67 259.2 432 36.1
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 6.0e-67 258.8 424 38.4
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 1.0e-66 258.1 429 38.2
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.7e-66 257.3 428 40.0
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 3.9e-66 256.1 435 36.8
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 3.9e-66 256.1 435 36.8
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 5.1e-66 255.8 429 37.8
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 6.6e-66 255.4 430 40.2
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 1.5e-65 254.2 427 37.9
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.5e-65 254.2 435 36.8
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 2.5e-65 253.4 433 37.2
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 3.3e-65 253.1 435 36.8
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 3.3e-65 253.1 428 37.1
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 5.6e-65 252.3 424 36.6
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 7.3e-65 251.9 432 37.0
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.2e-64 251.1 430 37.0
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.6e-64 250.8 423 34.5
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 2.1e-64 250.4 428 39.3
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 1.4e-63 247.7 434 36.9
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 2.4e-63 246.9 391 38.9
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 4.0e-63 246.1 433 38.6
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 6.8e-63 245.4 405 37.0
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 8.9e-63 245.0 434 34.1
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 8.9e-63 245.0 429 36.1
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.7e-61 240.7 435 34.7
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 3.8e-61 239.6 450 37.3
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 1.1e-60 238.0 423 35.5
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.9e-60 237.3 399 37.6
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.2e-60 236.5 484 33.1
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 4.2e-60 236.1 529 31.6
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 1.2e-59 234.6 418 35.6
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 1.6e-59 234.2 456 36.0
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.6e-59 234.2 403 38.2
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 2.7e-59 233.4 449 33.0
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 3.0e-58 229.9 422 35.3
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 3.0e-58 229.9 416 34.6
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.6e-56 224.2 429 34.0
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 1.1e-55 221.5 411 33.6
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 4.4e-54 216.1 259 43.6
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.9e-53 213.4 430 34.7
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 8.4e-53 211.8 250 47.2
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.5e-51 206.5 479 31.7
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 4.3e-49 199.5 460 33.0
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 3.6e-48 196.4 377 33.2
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 8.1e-48 195.3 393 31.8
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 1.8e-47 194.1 390 33.1
C05p38670 Brassica napus HOM05D002270 ORTHO05D002866 4.5e-46 189.5 162 67.9
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 5.8e-46 189.1 365 36.7
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.1e-44 184.9 354 36.7
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 7.1e-44 182.2 237 43.5
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 2.3e-42 177.2 394 34.0
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 6.7e-42 175.6 367 34.6
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 9.6e-41 171.8 437 30.9
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.6e-40 171.0 368 34.0
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 1.6e-40 171.0 414 32.9
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 3.8e-37 159.8 390 30.0
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 7.1e-36 155.6 295 33.6
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 3.5e-35 153.3 281 35.6
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 4.6e-35 152.9 285 36.8
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 2.3e-34 150.6 203 42.4
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 2.3e-34 150.6 393 31.8
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 3.9e-34 149.8 405 27.9
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 3.3e-33 146.7 197 42.6
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.1e-31 141.7 181 42.5
Nitab4.5_0003025g0030 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.4e-31 141.4 289 32.2
Os10g0456950 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 9.0e-31 138.7 281 32.4
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.2e-29 134.0 222 35.1
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 8.7e-26 122.1 162 38.9
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 1.1e-25 121.7 164 43.9
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 7.4e-25 119.0 161 42.2
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 6.3e-24 115.9 70 72.9
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 6.3e-24 115.9 358 27.4
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 1.4e-23 114.8 304 28.6
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.8e-23 114.4 166 38.6
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 4.1e-23 113.2 371 29.6
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 9.0e-23 112.1 66 71.2
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 9.0e-23 112.1 250 31.6
Cpa.g.sc30.17 Carica papaya HOM05D002270 ORTHO05D002866 2.0e-22 110.9 172 40.1
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 5.0e-21 106.3 70 71.4
C02p22560 Brassica napus HOM05D002270 ORTHO05D002866 1.4e-20 104.8 61 88.5
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 5.5e-20 102.8 57 82.5
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 3.6e-19 100.1 76 63.2
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.1e-15 88.6 72 55.6
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 1.8e-15 87.8 69 58.0
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 1.8e-15 87.8 89 52.8
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 3.4e-14 83.6 71 52.1
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 5.0e-13 79.7 92 45.7
QL93p0107_0362 Quercus lobata HOM05D002270 ORTHO05D002866 1.9e-12 77.8 89 48.3
Psat4g184160 Pisum sativum HOM05D002270 ORTHO05D002866 1.2e-11 75.1 128 33.6
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.0e-10 70.5 101 42.6
TPR.G23043 Trifolium pratense HOM05D002270 ORTHO05D002866 5.1e-10 69.7 67 50.7
Lalb_Chr20g0113891 Lupinus albus HOM05D002270 ORTHO05D002866 3.3e-09 67.0 32 81.2
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 3.3e-09 67.0 32 84.4
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 9.7e-09 65.5 32 81.2


User provided reference genes

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