Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14396 Brassica carinata HOM05D003546 ORTHO05D005667 2.1e-73 278.9 132 100.0
C02p18050 Brassica napus HOM05D003546 ORTHO05D005667 2.1e-62 242.3 118 95.8
BolC2t07938H Brassica oleracea HOM05D003546 ORTHO05D005667 1.8e-61 239.2 112 100.0
BraA01t02562Z Brassica rapa HOM05D003546 ORTHO05D014122 3.3e-47 191.8 100 92.0
BolC8t52242H Brassica oleracea HOM05D003546 ORTHO05D014122 5.3e-45 184.5 94 91.5
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 1.7e-43 179.5 94 91.5
C05p52660 Brassica napus HOM05D003546 ORTHO05D014122 1.1e-42 176.8 94 90.4
BolC4t26808H Brassica oleracea HOM05D003546 ORTHO05D014122 1.1e-42 176.8 94 90.4
BcaC02g08580 Brassica carinata HOM05D003546 ORTHO05D014122 5.5e-42 174.5 94 89.4
A08p37500 Brassica napus HOM05D003546 ORTHO05D014122 6.0e-41 171.0 93 88.2
C04p52320 Brassica napus HOM05D003546 ORTHO05D014122 8.7e-40 167.2 88 90.9
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 4.8e-30 134.8 111 67.6
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 4.8e-30 134.8 127 62.2
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 6.3e-30 134.4 112 67.9
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 1.1e-29 133.7 111 65.8
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 3.1e-29 132.1 111 66.7
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 6.9e-29 131.0 111 65.8
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 2.6e-28 129.0 124 61.3
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 2.6e-28 129.0 124 60.5
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 2.6e-28 129.0 111 64.9
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 4.5e-28 128.3 111 64.9
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 5.9e-28 127.9 111 64.0
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 2.2e-27 125.9 124 61.3
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 3.8e-27 125.2 111 60.4
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 3.8e-27 125.2 111 63.1
BcaC02g08582 Brassica carinata HOM05D003546 ORTHO05D014122 1.4e-26 123.2 69 88.4
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 7.2e-26 120.9 111 59.5
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 2.7e-25 119.0 111 58.6
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 4.7e-25 118.2 111 59.5
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 6.1e-25 117.9 111 58.6
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 1.0e-24 117.1 111 58.6
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 1.0e-24 117.1 111 58.6
BcaC01g00338 Brassica carinata HOM05D003546 ORTHO05D005667 1.8e-24 116.3 119 56.3
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 1.8e-24 116.3 111 58.6
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 1.8e-24 116.3 111 58.6
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 3.0e-24 115.5 111 56.8
C03p78600 Brassica napus HOM05D003546 ORTHO05D005667 3.9e-24 115.2 121 56.2
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 6.7e-24 114.4 111 56.8
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 8.8e-24 114.0 111 55.9
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 1.1e-23 113.6 111 55.9
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.1e-23 113.6 111 55.0
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.1e-23 113.6 111 55.0
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 1.1e-23 113.6 111 55.0
BolC6t36430H Brassica oleracea HOM05D003546 ORTHO05D031910 1.5e-23 113.2 69 81.2
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 1.5e-23 113.2 111 55.0
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 2.0e-23 112.8 111 55.9
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 2.0e-23 112.8 111 57.7
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 2.6e-23 112.5 111 55.0
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 3.3e-23 112.1 111 55.9
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 3.3e-23 112.1 111 56.8
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 3.3e-23 112.1 111 55.0
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 4.4e-23 111.7 111 55.9
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 4.4e-23 111.7 113 54.0
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 4.4e-23 111.7 111 56.8
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 4.4e-23 111.7 111 55.9
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 5.7e-23 111.3 111 52.3
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 5.7e-23 111.3 111 55.0
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 5.7e-23 111.3 111 55.0
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 5.7e-23 111.3 111 55.0
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 5.7e-23 111.3 111 55.0
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 5.7e-23 111.3 111 55.0
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 7.4e-23 110.9 111 55.9
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 7.4e-23 110.9 111 55.0
C06p12730 Brassica napus HOM05D003546 ORTHO05D031910 9.7e-23 110.5 67 82.1
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 9.7e-23 110.5 111 54.1
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 1.3e-22 110.2 111 57.7
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 1.7e-22 109.8 111 54.1
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 2.2e-22 109.4 111 55.0
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 2.2e-22 109.4 111 53.2
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 2.2e-22 109.4 111 53.2
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 2.2e-22 109.4 111 53.2
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 2.2e-22 109.4 111 56.8
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 2.8e-22 109.0 111 55.0
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 2.8e-22 109.0 111 54.1
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 3.7e-22 108.6 111 54.1
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 6.3e-22 107.8 125 51.2
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 6.3e-22 107.8 111 54.1
BcaC08g43888 Brassica carinata HOM05D003546 ORTHO05D031910 6.3e-22 107.8 63 84.1
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 6.3e-22 107.8 111 55.0
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 6.3e-22 107.8 111 53.2
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 6.3e-22 107.8 111 54.1
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 8.2e-22 107.5 125 49.6
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 8.2e-22 107.5 111 55.9
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 1.1e-21 107.1 111 54.1
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 1.1e-21 107.1 111 53.2
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 1.1e-21 107.1 111 55.0
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 1.1e-21 107.1 111 54.1
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 1.8e-21 106.3 111 52.3
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 1.8e-21 106.3 111 52.3
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 2.4e-21 105.9 110 53.6
C02p16330 Brassica napus HOM05D003546 ORTHO05D005667 2.4e-21 105.9 107 58.9
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 3.1e-21 105.5 111 53.2
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 3.1e-21 105.5 111 54.1
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 4.1e-21 105.1 111 54.1
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 4.1e-21 105.1 111 52.3
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 5.3e-21 104.8 111 55.0
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 6.9e-21 104.4 111 50.5
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 1.2e-20 103.6 112 53.6
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 1.2e-20 103.6 113 51.3
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 1.2e-20 103.6 111 53.2
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 2.0e-20 102.8 111 51.4
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 2.0e-20 102.8 111 51.4
A09p60550 Brassica napus HOM05D003546 ORTHO05D005667 3.4e-20 102.1 94 59.6
BraA09t41425Z Brassica rapa HOM05D003546 ORTHO05D005667 3.4e-20 102.1 94 59.6
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 3.4e-20 102.1 111 50.5
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 3.4e-20 102.1 111 51.4
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 5.9e-20 101.3 111 48.6
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 5.9e-20 101.3 111 53.2
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 5.9e-20 101.3 111 53.2
C07p60450 Brassica napus HOM05D003546 ORTHO05D027045 7.7e-20 100.9 102 53.9
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 7.7e-20 100.9 111 49.5
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 1.0e-19 100.5 111 49.5
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 1.3e-19 100.1 111 52.3
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 1.7e-19 99.8 109 53.2
C04p59530 Brassica napus HOM05D003546 ORTHO05D027045 2.2e-19 99.4 102 54.9
BolC4t27459H Brassica oleracea HOM05D003546 ORTHO05D027045 2.2e-19 99.4 102 54.9
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 2.9e-19 99.0 111 51.4
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 3.8e-19 98.6 129 44.2
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 3.8e-19 98.6 111 49.5
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 5.0e-19 98.2 111 47.7
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 1.4e-18 96.7 111 48.6
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 2.5e-18 95.9 111 48.6
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 9.4e-18 94.0 111 45.0
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 9.4e-18 94.0 111 46.8
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 1.6e-17 93.2 111 46.8
Phvul.005G070200 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 6.1e-17 91.3 111 46.8
BolC2t07734H Brassica oleracea HOM05D003546 ORTHO05D005667 3.0e-16 89.0 93 59.1
BcaB05g23518 Brassica carinata HOM05D003546 ORTHO05D014122 1.5e-15 86.7 63 71.4
C01p42230 Brassica napus HOM05D003546 ORTHO05D014122 9.7e-15 84.0 82 56.1
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 1.7e-14 83.2 111 45.9
GSVIVG01014076001 Vitis vinifera HOM05D003546 ORTHO05D005667 3.7e-14 82.0 91 50.5
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 6.3e-14 81.3 73 57.5
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 6.3e-14 81.3 116 43.1
C03p54870 Brassica napus HOM05D003546 ORTHO05D005667 8.2e-14 80.9 107 47.7
Cc05_g10570 Coffea canephora HOM05D003546 ORTHO05D005667 1.1e-13 80.5 91 49.5
BcaC09g49138 Brassica carinata HOM05D003546 ORTHO05D014122 2.4e-13 79.3 58 69.0
BcaC03g14253 Brassica carinata HOM05D003546 ORTHO05D005667 3.1e-13 79.0 83 56.6
C04p41100 Brassica napus HOM05D003546 ORTHO05D014122 3.1e-13 79.0 59 67.8
C02p16530 Brassica napus HOM05D003546 ORTHO05D005667 4.1e-13 78.6 51 80.4
Pp3c6_13210 Physcomitrium patens HOM05D003546 ORTHO05D005667 5.3e-13 78.2 116 40.5
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 9.1e-13 77.4 55 69.1
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 1.2e-12 77.0 56 64.3
Pp3c5_14610 Physcomitrium patens HOM05D000518 ORTHO05D005667 1.2e-12 77.0 116 40.5
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 1.6e-12 76.6 55 67.3
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 1.6e-12 76.6 55 67.3
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 5.9e-12 74.7 110 40.9
RcHm_v2.0_Chr5g0028931 Rosa chinensis HOM05D003546 ORTHO05D005667 1.3e-11 73.6 56 60.7
BcaB01g00957 Brassica carinata HOM05D003546 ORTHO05D014122 1.7e-11 73.2 63 61.9
AagrBONN_evm.TU.Sc2ySwM_344.5210 Anthoceros agrestis HOM05D003546 ORTHO05D005667 3.2e-10 68.9 110 38.2
BcaC07g41321 Brassica carinata HOM05D003546 ORTHO05D005667 1.2e-09 67.0 108 39.8
BolC8t47744H Brassica oleracea HOM05D003546 ORTHO05D040745 1.2e-09 67.0 74 50.0
A09p22480 Brassica napus HOM05D003546 ORTHO05D014122 2.7e-09 65.9 50 72.0
C08p08990 Brassica napus HOM05D003546 ORTHO05D040745 2.7e-09 65.9 52 67.3
SMO163G0088 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 3.6e-09 65.5 120 35.8
MCO15G239 Micromonas commoda HOM05D003546 ORTHO05D005667 5.2e-08 61.6 115 38.3


User provided reference genes

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