Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14360 Brassica carinata HOM05D011067 ORTHO05D014965 2.4e-75 285.4 145 100.0
BcaC05g28138 Brassica carinata HOM05D011067 ORTHO05D014965 2.9e-60 235.3 145 87.6
BcaC04g22813 Brassica carinata HOM05D011067 ORTHO05D014965 1.3e-57 226.5 145 86.9
A03p21220 Brassica napus HOM05D011067 ORTHO05D014965 4.3e-56 221.5 151 82.1
C01p21930 Brassica napus HOM05D011067 ORTHO05D014965 1.0e-41 173.7 97 91.8
BraA09t38956Z Brassica rapa HOM05D011067 ORTHO05D028343 1.3e-41 173.3 273 45.8
C03p64990 Brassica napus HOM05D011067 ORTHO05D014965 6.6e-41 171.0 97 90.7
C09p15120 Brassica napus HOM05D011067 ORTHO05D014965 9.6e-40 167.2 97 90.7
BraA05t19030Z Brassica rapa HOM05D011067 ORTHO05D028343 5.6e-24 114.8 76 77.6
BraA03t11359Z Brassica rapa HOM05D011067 ORTHO05D014965 2.7e-18 95.9 56 80.4
BolC3t18757H Brassica oleracea HOM05D011067 ORTHO05D028343 5.1e-17 91.7 202 37.1
BolC9t54418H Brassica oleracea HOM05D011067 ORTHO05D028343 2.2e-12 76.3 58 74.1
FAN05G2836 Fragaria x ananassa HOM05D005735 ORTHO05D006547 4.6e-10 68.6 54 57.4
AL5G34880 Arabidopsis lyrata HOM05D005735 ORTHO05D006547 6.1e-10 68.2 54 61.1
BcaC07g39745 Brassica carinata HOM05D000012 ORTHO05D002345 6.1e-10 68.2 54 61.1
C08p29170 Brassica napus HOM05D005735 ORTHO05D006547 6.1e-10 68.2 54 61.1
BolC8t50518H Brassica oleracea HOM05D005735 ORTHO05D006547 6.1e-10 68.2 54 61.1
Aa31sc27G110 Aethionema arabicum HOM05D005735 ORTHO05D006547 7.9e-10 67.8 54 61.1
AT3G53900 Arabidopsis thaliana HOM05D005735 ORTHO05D006547 7.9e-10 67.8 54 61.1
BcaB02g07762 Brassica carinata HOM05D005735 ORTHO05D006547 7.9e-10 67.8 54 61.1
BcaC08g44651 Brassica carinata HOM05D005735 ORTHO05D006547 7.9e-10 67.8 54 61.1
A07p21840 Brassica napus HOM05D005735 ORTHO05D006547 7.9e-10 67.8 54 61.1
C06p21670 Brassica napus HOM05D005735 ORTHO05D006547 7.9e-10 67.8 54 61.1
BolC6t37356H Brassica oleracea HOM05D005735 ORTHO05D006547 7.9e-10 67.8 54 61.1
BraA07t29866Z Brassica rapa HOM05D005735 ORTHO05D006547 7.9e-10 67.8 54 61.1
A09p46850 Brassica napus HOM05D005735 ORTHO05D006547 1.0e-09 67.4 54 61.1
BraA09t40153Z Brassica rapa HOM05D005735 ORTHO05D006547 1.0e-09 67.4 54 61.1
Carub.0005s2048 Capsella rubella HOM05D005735 ORTHO05D006547 1.4e-09 67.0 54 59.3
Ca_20080_v3 Cicer arietinum L. HOM05D005735 ORTHO05D006547 1.4e-09 67.0 55 56.4
AUR62033384 Chenopodium quinoa HOM05D005735 ORTHO05D006547 1.8e-09 66.6 57 50.9
Thhalv10010595m.g Eutrema salsugineum HOM05D005735 ORTHO05D006547 1.8e-09 66.6 54 59.3
Sabra06G0068800 Salix brachista HOM05D005735 ORTHO05D006547 1.8e-09 66.6 54 57.4
Duzib093G1348 Durio zibethinus HOM05D005735 ORTHO05D006547 2.3e-09 66.2 54 57.4
THA.LOC104805616 Tarenaya hassleriana HOM05D005735 ORTHO05D006547 2.3e-09 66.2 73 49.3
BcaB01g00229 Brassica carinata HOM05D005735 ORTHO05D006547 3.0e-09 65.9 54 59.3
Cpa.g.sc56.31 Carica papaya HOM05D005735 ORTHO05D006547 3.0e-09 65.9 54 55.6
Cfa017317 Carpinus fangiana HOM05D005735 ORTHO05D006547 3.0e-09 65.9 54 55.6
CiPaw.09G199400 Carya illinoinensis HOM05D005735 ORTHO05D006547 3.0e-09 65.9 54 55.6
Migut.J00281 Erythranthe guttata HOM05D005735 ORTHO05D006547 3.0e-09 65.9 54 55.6
Lalb_Chr22g0358651 Lupinus albus HOM05D005735 ORTHO05D006547 3.0e-09 65.9 54 55.6
Lalb_Chr24g0401021 Lupinus albus HOM05D005735 ORTHO05D006547 3.0e-09 65.9 54 55.6
CARHR163810 Cardamine hirsuta HOM05D005735 ORTHO05D006547 3.9e-09 65.5 54 57.4
AUR62004273 Chenopodium quinoa HOM05D005735 ORTHO05D006547 3.9e-09 65.5 54 55.6
COL.COLO4_14723 Corchorus olitorius HOM05D005735 ORTHO05D006547 3.9e-09 65.5 54 57.4
FAN02G2999 Fragaria x ananassa HOM05D005735 ORTHO05D006547 3.9e-09 65.5 55 54.5
Gohir.A09G153300 Gossypium hirsutum HOM05D005735 ORTHO05D006547 3.9e-09 65.5 54 57.4
Gohir.D09G149000 Gossypium hirsutum HOM05D005735 ORTHO05D006547 3.9e-09 65.5 54 57.4
Gorai.006G170200 Gossypium raimondii HOM05D005735 ORTHO05D006547 3.9e-09 65.5 54 57.4
Actinidia29177 Actinidia chinensis HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
arahy.Tifrunner.gnm1.ann1.879M1U Arachis hypogaea HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
arahy.Tifrunner.gnm1.ann1.ECZP7J Arachis hypogaea HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
CSS0004316 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
CAN.G229.30 Capsicum annuum HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
Dinv37132 Davidia involucrata HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
ECA236G4371 Erigeron canadensis HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
Eucgr.B02718 Eucalyptus grandis HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
Glyma.01G099700 Glycine max HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
Glyma.03G069600 Glycine max HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
Lj3g0007667 Lotus japonicus HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
MD04G1136300 Malus domestica HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
Peaxi162Scf00318g00510 Petunia axillaris HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
Phvul.010G015300 Phaseolus vulgaris HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
QL07p028744 Quercus lobata HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
Sc01g0004650 Simmondsia chinensis HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
TWI77G0204 Tripterygium wilfordii HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
HPP92_027961 Vanilla planifolia HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
VMungo0331G1562 Vigna mungo HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 53.7
GSVIVG01034092001 Vitis vinifera HOM05D005735 ORTHO05D006547 5.1e-09 65.1 54 55.6
CANSAT35G1842 Cannabis sativa HOM05D005735 ORTHO05D006547 6.7e-09 64.7 54 53.7
Ciclev10012178m.g Citrus clementina HOM05D005735 ORTHO05D006547 6.7e-09 64.7 54 53.7
Haze_20854 Corylus avellana HOM05D005735 ORTHO05D006547 8.8e-09 64.3 54 53.7
Haze_20857 Corylus avellana HOM05D005735 ORTHO05D006547 8.8e-09 64.3 54 53.7
Potri.006G091000 Populus trichocarpa HOM05D005735 ORTHO05D006547 8.8e-09 64.3 54 53.7
Sp5g08500 Schrenkiella parvula HOM05D005735 ORTHO05D006547 8.8e-09 64.3 54 61.1
CSS0015426 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 1.1e-08 63.9 54 55.6
Hma1.2p1_0766F.1_g215130 Hydrangea macrophylla HOM05D005735 ORTHO05D006547 1.1e-08 63.9 54 53.7
Lsat_1_v5_gn_8_84641 Lactuca sativa HOM05D005735 ORTHO05D006547 1.1e-08 63.9 54 53.7
MD12G1150800 Malus domestica HOM05D005735 ORTHO05D006547 1.1e-08 63.9 54 53.7
Nitab4.5_0000362g0060 Nicotiana tabacum HOM05D005735 ORTHO05D006547 1.1e-08 63.9 54 53.7
PGSC0003DMG400008888 Solanum tuberosum HOM05D005735 ORTHO05D006547 1.1e-08 63.9 54 53.7
Thecc.05G031800 Theobroma cacao HOM05D005735 ORTHO05D006547 1.1e-08 63.9 54 55.6
Actinidia13829 Actinidia chinensis HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
Cc06_g02200 Coffea canephora HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
MELO3C003165.2 Cucumis melo HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
CsaV3_4G025430 Cucumis sativus L. HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
Dinv35555 Davidia involucrata HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
FvH4_6g12970 Fragaria vesca HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
MBI14_g09010_MAGBIO Magnolia biondii HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
Os05g0455700 Oryza sativa ssp. japonica HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
Prupe.6G262400 Prunus persica HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
RcHm_v2.0_Chr3g0465081 Rosa chinensis HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
Hund27335 Selenicereus undatus HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
Solyc09g011300.3 Solanum lycopersicum HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
Sopen09g006020 Solanum pennellii HOM05D005735 ORTHO05D006547 1.5e-08 63.5 54 53.7
Atru.chr8.2067 Acer truncatum HOM05D005735 ORTHO05D006547 2.0e-08 63.2 54 53.7
ATR0559G328 Amborella trichopoda HOM05D005735 ORTHO05D006547 2.0e-08 63.2 54 51.9
HanXRQChr06g0177411 Helianthus annuus HOM05D005735 ORTHO05D006547 2.0e-08 63.2 54 53.7
Lj2A88G66 Lonicera japonica HOM05D005735 ORTHO05D006547 2.0e-08 63.2 54 53.7
Aqoxy2G02353 Aquilegia oxysepala HOM05D005735 ORTHO05D006547 2.5e-08 62.8 54 51.9
BolC1t02120H Brassica oleracea HOM05D011067 ORTHO05D014965 2.5e-08 62.8 33 97.0
CSS0042696 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 2.5e-08 62.8 54 53.7
Oeu001404.1 Olea europaea HOM05D005735 ORTHO05D006547 2.5e-08 62.8 54 53.7
EL10Ac1g00952 Beta vulgaris HOM05D005735 ORTHO05D006547 3.3e-08 62.4 54 51.9
Nn2g13495 Nelumbo nucifera HOM05D005735 ORTHO05D006547 3.3e-08 62.4 54 53.7
Nn2g13496 Nelumbo nucifera HOM05D005735 ORTHO05D006547 3.3e-08 62.4 54 53.7
PGR031G0186 Punica granatum HOM05D005735 ORTHO05D006547 3.3e-08 62.4 54 51.9
SGA_v2.0_scaffold75G24970 Striga asiatica HOM05D005735 ORTHO05D006547 3.3e-08 62.4 54 53.7
Zm00001eb289550 Zea mays HOM05D005735 ORTHO05D006547 3.3e-08 62.4 54 50.0
CiPaw.10G148500 Carya illinoinensis HOM05D005735 ORTHO05D006547 4.3e-08 62.0 54 53.7
HanXRQChr04g0124581 Helianthus annuus HOM05D005735 ORTHO05D006547 4.3e-08 62.0 54 53.7
Psat7g240200 Pisum sativum HOM05D005735 ORTHO05D006547 4.3e-08 62.0 54 53.7
TPR.G17885 Trifolium pratense HOM05D005735 ORTHO05D006547 4.3e-08 62.0 54 53.7
Duzib128G0016 Durio zibethinus HOM05D005735 ORTHO05D006547 5.7e-08 61.6 55 54.5
TAR636G0229 Trochodendron aralioides HOM05D005735 ORTHO05D006547 5.7e-08 61.6 54 50.0
Manes.09G096300 Manihot esculenta HOM05D005735 ORTHO05D006547 9.7e-08 60.8 54 51.9
Sed0015161 Sechium edule HOM05D005735 ORTHO05D006547 9.7e-08 60.8 54 50.0
DCAR_012131 Daucus carota HOM05D005735 ORTHO05D006547 1.3e-07 60.5 54 48.1
Medtr4g020090 Medicago truncatula HOM05D005735 ORTHO05D006547 1.3e-07 60.5 54 51.9
PSO339G4903 Papaver somniferum HOM05D005735 ORTHO05D006547 1.3e-07 60.5 54 51.9
PSO513G0055 Papaver somniferum HOM05D005735 ORTHO05D006547 1.3e-07 60.5 54 51.9
Hund16974 Selenicereus undatus HOM05D005735 ORTHO05D006547 1.3e-07 60.5 54 50.0
Pp3c9_24300 Physcomitrium patens HOM05D005735 ORTHO05D006547 1.7e-07 60.1 54 51.9
AagrBONN_evm.TU.Sc2ySwM_228.3184 Anthoceros agrestis HOM05D005735 ORTHO05D006547 2.2e-07 59.7 54 50.0
Mapoly0035s0109 Marchantia polymorpha HOM05D005735 ORTHO05D006547 2.2e-07 59.7 54 48.1
DCAR_028771 Daucus carota HOM05D005735 ORTHO05D006547 3.7e-07 58.9 54 50.0
CBR_g17719 Chara braunii HOM05D005735 ORTHO05D006547 6.3e-07 58.2 55 49.1
Migut.J00280 Erythranthe guttata HOM05D005735 ORTHO05D006547 6.3e-07 58.2 55 49.1
Rhsim04G0162200 Rhododendron simsii HOM05D005735 ORTHO05D006547 6.3e-07 58.2 52 51.9
SMO147G0009 Selaginella moellendorffii HOM05D005735 ORTHO05D006547 6.3e-07 58.2 56 46.4
vmacro08634 Vaccinium macrocarpon HOM05D005735 ORTHO05D006547 2.4e-06 56.2 52 50.0
CDE04G2966 Ceratophyllum demersum HOM05D005735 ORTHO05D006547 3.1e-06 55.8 54 50.0
A10p03960 Brassica napus HOM05D011067 ORTHO05D014965 4.1e-06 55.5 29 100.0
BraA10t42671Z Brassica rapa HOM05D011067 ORTHO05D014965 4.1e-06 55.5 29 100.0


User provided reference genes

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