Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 7.3e-190 667.2 361 100.0
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 6.2e-189 664.1 361 99.4
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 6.4e-186 654.1 362 98.3
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 7.9e-184 647.1 388 92.8
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 6.7e-183 644.0 383 93.2
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 4.5e-179 631.3 360 95.3
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 1.5e-174 616.3 360 93.1
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 5.3e-172 607.8 360 91.1
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 3.2e-169 598.6 360 90.3
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 3.0e-167 592.0 360 88.6
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 2.4e-164 582.4 360 88.6
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 2.4e-164 582.4 360 88.3
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 4.6e-160 568.2 365 86.0
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 2.5e-137 492.7 366 77.6
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 6.1e-128 461.5 360 71.9
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 7.5e-126 454.5 364 71.4
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 3.7e-125 452.2 372 70.7
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 5.4e-124 448.4 363 71.6
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.6e-123 446.8 372 69.4
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 1.6e-123 446.8 312 79.8
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 4.5e-123 445.3 367 70.8
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 4.5e-123 445.3 346 72.8
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 1.0e-122 444.1 365 70.7
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 1.3e-122 443.7 359 70.8
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 1.7e-122 443.4 308 77.6
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 6.6e-122 441.4 289 82.4
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 6.6e-122 441.4 289 82.4
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.1e-121 440.7 367 69.8
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 1.5e-121 440.3 366 69.1
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.9e-121 439.9 288 80.6
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 2.5e-121 439.5 291 80.8
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 4.3e-121 438.7 322 75.5
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 5.6e-121 438.3 289 82.0
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 5.6e-121 438.3 363 70.0
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 7.3e-121 438.0 327 73.7
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 9.5e-121 437.6 311 75.6
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 9.5e-121 437.6 353 70.0
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 9.5e-121 437.6 314 78.0
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 3.6e-120 435.6 391 66.2
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 4.7e-120 435.3 291 81.1
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 6.1e-120 434.9 283 81.6
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 8.0e-120 434.5 289 81.0
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 1.0e-119 434.1 320 76.9
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 1.0e-119 434.1 307 77.5
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 1.0e-119 434.1 340 71.5
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 1.4e-119 433.7 387 65.4
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 1.8e-119 433.3 291 80.8
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.8e-119 433.3 264 86.4
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 1.8e-119 433.3 321 74.1
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 1.8e-119 433.3 291 80.8
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 2.3e-119 433.0 311 75.9
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 2.3e-119 433.0 265 87.2
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 3.0e-119 432.6 311 74.6
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 3.0e-119 432.6 289 78.9
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 3.0e-119 432.6 320 73.1
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 4.0e-119 432.2 278 81.3
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 4.0e-119 432.2 307 76.2
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 4.0e-119 432.2 291 80.4
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 5.2e-119 431.8 308 76.9
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 5.2e-119 431.8 291 79.7
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 5.2e-119 431.8 289 82.4
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 6.8e-119 431.4 311 75.6
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 6.8e-119 431.4 343 70.3
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 6.8e-119 431.4 333 72.1
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 6.8e-119 431.4 320 74.7
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 8.9e-119 431.0 334 71.6
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 2.6e-118 429.5 289 80.3
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 4.4e-118 428.7 263 86.3
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 4.4e-118 428.7 311 74.9
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 2.2e-117 426.4 323 73.1
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 4.9e-117 425.2 318 73.3
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 4.9e-117 425.2 289 79.9
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 3.2e-116 422.5 336 70.2
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 5.4e-116 421.8 291 78.4
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.2e-115 420.6 284 82.0
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 5.9e-115 418.3 316 74.4
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 8.6e-114 414.5 294 77.6
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 8.6e-114 414.5 289 78.9
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.5e-113 413.7 386 64.5
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 5.6e-113 411.8 318 71.4
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 2.6e-110 402.9 339 68.7
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 3.4e-110 402.5 290 74.8
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.4e-110 402.5 290 75.5
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 2.2e-109 399.8 292 74.3
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.9e-105 386.7 387 58.7
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 1.8e-103 380.2 333 68.2
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 3.4e-102 375.9 246 81.7
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 7.5e-102 374.8 329 66.3
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 3.7e-101 372.5 286 70.6
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 3.7e-101 372.5 267 75.7
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 1.4e-100 370.5 267 73.0
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 2.4e-100 369.8 352 63.9
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.6e-99 367.1 314 67.2
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 3.5e-99 365.9 245 79.6
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 1.0e-98 364.4 278 71.6
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.0e-98 364.4 278 74.1
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 1.5e-97 360.5 396 58.6
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 4.3e-97 359.0 396 58.3
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.4e-95 354.0 225 84.0
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 8.9e-95 351.3 254 76.0
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 2.6e-94 349.7 258 72.1
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 2.2e-93 346.7 325 60.6
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 9.6e-89 331.3 316 62.0
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 8.1e-88 328.2 196 86.2
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.1e-87 327.8 240 73.3
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 3.8e-85 319.3 276 66.3
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 4.3e-81 305.8 290 63.8
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 1.8e-79 300.4 262 62.6
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 5.6e-73 278.9 247 65.6
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 5.8e-70 268.9 231 70.6
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 5.8e-70 268.9 276 57.2
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 1.3e-69 267.7 245 59.2
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.6e-67 260.8 285 58.6
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 1.9e-65 253.8 231 68.8
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.0e-62 243.8 270 55.2
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 1.3e-61 241.1 286 49.7
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 5.0e-53 212.6 200 62.5
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 2.1e-51 207.2 140 84.3
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 8.2e-48 195.3 135 79.3
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.7e-40 169.9 98 87.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 6.9e-39 165.6 142 69.0
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 1.0e-37 161.8 204 55.4
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 5.2e-34 149.4 93 80.6
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 9.7e-33 145.2 157 56.7
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.8e-32 143.7 157 56.1
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.8e-29 133.3 125 62.4
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.7e-21 107.8 80 68.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.3e-16 91.7 96 58.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 6.3e-16 89.4 60 80.0
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 1.5e-12 78.2 225 31.6
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 2.3e-10 70.9 47 76.6
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 5.9e-06 56.2 41 70.7
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 5.9e-06 56.2 29 100.0


User provided reference genes

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