Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14159 Brassica carinata HOM05D007606 ORTHO05D009600 2.0e-67 259.6 208 100.0
BolC2t07555H Brassica oleracea HOM05D007606 ORTHO05D009600 6.6e-66 254.6 208 99.0
C02p14290 Brassica napus HOM05D007606 ORTHO05D009600 2.2e-53 213.0 209 89.5
Sp6g19090 Schrenkiella parvula HOM05D007606 ORTHO05D009600 2.3e-47 193.0 171 77.2
BraA02t05924Z Brassica rapa HOM05D007606 ORTHO05D009600 8.3e-45 184.5 210 81.4
A02p08550 Brassica napus HOM05D007606 ORTHO05D009600 1.4e-44 183.7 210 82.9
C09p49270 Brassica napus HOM05D007606 ORTHO05D009600 2.8e-40 169.5 153 83.0
BolC9t57778H Brassica oleracea HOM05D007606 ORTHO05D009600 2.8e-40 169.5 153 83.0
BcaC04g19971 Brassica carinata HOM05D007606 ORTHO05D009600 4.7e-40 168.7 155 81.9
Aa31LG3G13250 Aethionema arabicum HOM05D007606 ORTHO05D009600 1.1e-39 167.5 162 76.5
Carub.0008s1789 Capsella rubella HOM05D007606 ORTHO05D009600 2.9e-37 159.5 170 75.9
BcaB05g22341 Brassica carinata HOM05D007606 ORTHO05D009600 1.1e-36 157.5 98 88.8
AT5G57370 Arabidopsis thaliana HOM05D007606 ORTHO05D009600 1.3e-34 150.6 114 76.3
AL8G33350 Arabidopsis lyrata HOM05D007606 ORTHO05D009600 3.3e-33 146.0 105 79.0
CARHR271170 Cardamine hirsuta HOM05D007606 ORTHO05D009600 8.1e-32 141.4 107 77.6
Sed0005573 Sechium edule HOM05D007606 ORTHO05D009600 3.1e-31 139.4 109 69.7
MELO3C017454.2 Cucumis melo HOM05D007606 ORTHO05D009600 6.8e-31 138.3 109 69.7
MD13G1252200 Malus domestica HOM05D007606 ORTHO05D009600 1.2e-30 137.5 109 72.5
THA.LOC104813519 Tarenaya hassleriana HOM05D007606 ORTHO05D009600 1.2e-30 137.5 101 76.2
CsaV3_1G031690 Cucumis sativus L. HOM05D007606 ORTHO05D009600 3.4e-30 136.0 161 67.1
FvH4_4g07990 Fragaria vesca HOM05D007606 ORTHO05D009600 1.4e-28 130.6 108 67.6
A10p14850 Brassica napus HOM05D007606 ORTHO05D009600 1.2e-27 127.5 62 100.0
BraA10t43563Z Brassica rapa HOM05D007606 ORTHO05D009600 1.2e-27 127.5 62 100.0
Glyma.17G062400 Glycine max HOM05D007606 ORTHO05D009600 1.6e-27 127.1 108 65.7
Prupe.1G084400 Prunus persica HOM05D007606 ORTHO05D009600 2.1e-27 126.7 98 70.4
FAN07G2281 Fragaria x ananassa HOM05D007606 ORTHO05D009600 6.0e-27 125.2 108 65.7
Cpa.g.sc523.4 Carica papaya HOM05D007606 ORTHO05D009600 7.8e-27 124.8 99 71.7
MD16G1256400 Malus domestica HOM05D007606 ORTHO05D009600 1.3e-26 124.0 97 71.1
RcHm_v2.0_Chr4g0401721 Rosa chinensis HOM05D007606 ORTHO05D009600 1.3e-26 124.0 108 63.0
CiPaw.07G193100 Carya illinoinensis HOM05D007606 ORTHO05D009600 6.6e-26 121.7 105 64.8
HanXRQChr12g0365451 Helianthus annuus HOM05D007606 ORTHO05D009600 8.7e-26 121.3 102 66.7
Potri.018G091300 Populus trichocarpa HOM05D007606 ORTHO05D009600 8.7e-26 121.3 108 63.9
Sabra18G0078500 Salix brachista HOM05D007606 ORTHO05D009600 1.1e-25 120.9 106 65.1
TWI32G0742 Tripterygium wilfordii HOM05D007606 ORTHO05D009600 1.1e-25 120.9 103 66.0
HPP92_010764 Vanilla planifolia HOM05D007606 ORTHO05D009600 1.1e-25 120.9 110 61.8
Atru.chr7.594 Acer truncatum HOM05D007606 ORTHO05D009600 1.9e-25 120.2 102 65.7
Eucgr.C02351 Eucalyptus grandis HOM05D007606 ORTHO05D009600 2.5e-25 119.8 170 63.5
Actinidia01312 Actinidia chinensis HOM05D007606 ORTHO05D009600 3.3e-25 119.4 106 66.0
QL02p097943 Quercus lobata HOM05D007606 ORTHO05D009600 3.3e-25 119.4 107 66.4
EL10Ac8g18293 Beta vulgaris HOM05D007606 ORTHO05D009600 4.3e-25 119.0 114 63.2
FAN17G2268 Fragaria x ananassa HOM05D007606 ORTHO05D009600 4.3e-25 119.0 108 63.0
CANSAT11G0497 Cannabis sativa HOM05D007606 ORTHO05D009600 5.6e-25 118.6 102 66.7
Sc18g0007510 Simmondsia chinensis HOM05D007606 ORTHO05D009600 5.6e-25 118.6 103 64.1
COL.COLO4_37736 Corchorus olitorius HOM05D007606 ORTHO05D009600 7.3e-25 118.2 97 69.1
CSS0005882 Camellia sinensis var. sinensis HOM05D007606 ORTHO05D009600 9.6e-25 117.9 63 88.9
Manes.14G154600 Manihot esculenta HOM05D007606 ORTHO05D009600 9.6e-25 117.9 102 65.7
Glyma.13G097200 Glycine max HOM05D007606 ORTHO05D009600 1.2e-24 117.5 108 62.0
Medtr4g127860 Medicago truncatula HOM05D007606 ORTHO05D009600 1.6e-24 117.1 102 63.7
Lsat_1_v5_gn_8_67821 Lactuca sativa HOM05D007606 ORTHO05D009600 2.1e-24 116.7 99 68.7
Os02g0461600 Oryza sativa ssp. japonica HOM05D007606 ORTHO05D009600 2.8e-24 116.3 101 63.4
BcaB08g36096 Brassica carinata HOM05D007606 ORTHO05D009600 4.7e-24 115.5 66 90.9
Rhsim03G0264900 Rhododendron simsii HOM05D007606 ORTHO05D009600 4.7e-24 115.5 106 62.3
Aqoxy7G03025 Aquilegia oxysepala HOM05D007606 ORTHO05D009600 6.2e-24 115.2 103 61.2
Ah.09g229950 Amaranthus hybridus HOM05D007606 ORTHO05D009600 1.8e-23 113.6 108 62.0
Gohir.D08G193500 Gossypium hirsutum HOM05D007606 ORTHO05D009600 4.0e-23 112.5 106 60.4
Psat4g012880 Pisum sativum HOM05D007606 ORTHO05D009600 4.0e-23 112.5 70 78.6
TAR383G0717 Trochodendron aralioides HOM05D007606 ORTHO05D009600 4.0e-23 112.5 104 64.4
Ciclev10009582m.g Citrus clementina HOM05D007606 ORTHO05D009600 5.3e-23 112.1 101 64.4
Hma1.2p1_1025F.1_g249400 Hydrangea macrophylla HOM05D007606 ORTHO05D009600 6.9e-23 111.7 66 86.4
Phvul.003G144300 Phaseolus vulgaris HOM05D007606 ORTHO05D009600 6.9e-23 111.7 107 60.7
Zm00001eb327770 Zea mays HOM05D007606 ORTHO05D009600 1.5e-22 110.5 69 76.8
Lalb_Chr13g0300161 Lupinus albus HOM05D007606 ORTHO05D009600 2.6e-22 109.8 108 61.1
Nn5g27171 Nelumbo nucifera HOM05D007606 ORTHO05D009600 3.4e-22 109.4 99 64.6
PSO063G2142 Papaver somniferum HOM05D007606 ORTHO05D009600 3.4e-22 109.4 109 56.9
HanXRQChr08g0212621 Helianthus annuus HOM05D007606 ORTHO05D009600 4.4e-22 109.0 159 46.5
Gorai.004G203800 Gossypium raimondii HOM05D007606 ORTHO05D009600 5.8e-22 108.6 105 60.0
Cc06_g13140 Coffea canephora HOM05D007606 ORTHO05D009600 7.6e-22 108.2 73 76.7
Lj5P601T23 Lonicera japonica HOM05D007606 ORTHO05D009600 2.2e-21 106.7 63 84.1
Duzib168G1965 Durio zibethinus HOM05D007606 ORTHO05D009600 2.9e-21 106.3 98 63.3
Sopen07g006820 Solanum pennellii HOM05D007606 ORTHO05D009600 2.9e-21 106.3 111 59.5
GSVIVG01029223001 Vitis vinifera HOM05D007606 ORTHO05D009600 4.9e-21 105.5 74 74.3
Hund26341 Selenicereus undatus HOM05D007606 ORTHO05D009600 6.4e-21 105.1 174 44.8
Thecc.09G175900 Theobroma cacao HOM05D007606 ORTHO05D009600 1.1e-20 104.4 97 61.9
Gohir.A08G174900 Gossypium hirsutum HOM05D007606 ORTHO05D009600 1.9e-20 103.6 104 57.7
FAN12G2299 Fragaria x ananassa HOM05D007606 ORTHO05D009600 2.4e-20 103.2 94 62.8
SGA_v2.0_scaffold66G22417 Striga asiatica HOM05D007606 ORTHO05D009600 2.4e-20 103.2 67 76.1
CAN.G321.18 Capsicum annuum HOM05D007606 ORTHO05D009600 3.2e-20 102.8 98 62.2
PGSC0003DMG400004088 Solanum tuberosum HOM05D007606 ORTHO05D009600 3.2e-20 102.8 109 57.8
Ca_21234_v3 Cicer arietinum L. HOM05D007606 ORTHO05D009600 7.1e-20 101.7 53 90.6
Oeu025687.1 Olea europaea HOM05D007606 ORTHO05D009600 7.1e-20 101.7 63 79.4
MSTRG.6226 Avicennia marina HOM05D007606 ORTHO05D009600 1.6e-19 100.5 63 76.2
SHI02893 Sapria himalayana HOM05D007606 ORTHO05D009600 1.6e-19 100.5 98 57.1
AUR62021308 Chenopodium quinoa HOM05D007606 ORTHO05D009600 3.5e-19 99.4 55 85.5
Nitab4.5_0000055g0310 Nicotiana tabacum HOM05D007606 ORTHO05D009600 3.5e-19 99.4 59 83.1
arahy.Tifrunner.gnm1.ann1.TB3R4X Arachis hypogaea HOM05D007606 ORTHO05D009600 4.6e-19 99.0 86 67.4
PSO339G0750 Papaver somniferum HOM05D007606 ORTHO05D009600 4.6e-19 99.0 109 56.9
Migut.J01493 Erythranthe guttata HOM05D007606 ORTHO05D009600 7.8e-19 98.2 103 55.3
FAN22G0657 Fragaria x ananassa HOM05D007606 ORTHO05D009600 3.9e-18 95.9 94 60.6
SEGI_36552 Sequoiadendron giganteum HOM05D007606 ORTHO05D009600 5.1e-18 95.5 107 51.4
CBR_g51476 Chara braunii HOM05D007606 ORTHO05D009600 4.3e-17 92.4 68 69.1
Mapoly0026s0023 Marchantia polymorpha HOM05D007606 ORTHO05D009600 1.1e-15 87.8 63 66.7
AagrBONN_evm.TU.Sc2ySwM_362.441 Anthoceros agrestis HOM05D007606 ORTHO05D009600 1.4e-15 87.4 108 49.1
Pp3c7_10050 Physcomitrium patens HOM05D007606 ORTHO05D009600 9.0e-15 84.7 99 51.5
SMO358G0723 Selaginella moellendorffii HOM05D007606 ORTHO05D009600 2.0e-14 83.6 106 50.0
Cre10.g465950 Chlamydomonas reinhardtii HOM05D007606 ORTHO05D009600 6.0e-11 72.0 100 42.0


User provided reference genes

Program Settings