Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.5e-113 412.9 210 100.0
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 4.3e-89 331.6 171 99.4
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 6.8e-87 324.3 169 95.9
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.2e-86 323.6 169 95.9
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.4e-86 322.0 169 95.9
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.8e-86 321.2 169 94.7
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 3.7e-85 318.5 169 93.5
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.9e-85 318.2 167 95.2
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 6.4e-85 317.8 169 94.1
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.1e-84 315.1 169 93.5
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 9.2e-84 313.9 169 91.7
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.5e-83 312.0 169 92.3
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 3.0e-82 308.9 168 91.7
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.0e-82 308.9 169 89.9
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.9e-77 292.4 167 90.4
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 2.9e-77 292.4 169 86.4
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 7.1e-76 287.7 167 84.4
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.1e-75 286.2 169 82.2
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 2.7e-75 285.8 169 82.8
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 3.5e-75 285.4 169 82.8
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 6.0e-75 284.6 169 83.4
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 6.0e-75 284.6 169 84.6
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 7.8e-75 284.3 171 86.0
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 7.8e-75 284.3 169 82.2
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.0e-74 283.9 167 82.6
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.3e-74 283.5 168 83.9
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 1.3e-74 283.5 169 82.2
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.3e-74 283.5 169 83.4
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.3e-74 283.5 169 84.0
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.7e-74 283.1 169 81.7
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 1.7e-74 283.1 169 81.7
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 3.0e-74 282.3 169 81.7
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 6.6e-74 281.2 166 81.3
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 8.6e-74 280.8 170 90.6
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 8.6e-74 280.8 169 81.7
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.5e-73 280.0 169 82.8
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.9e-73 279.6 169 82.8
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.9e-73 279.6 169 82.2
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 3.3e-73 278.9 169 79.9
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 3.3e-73 278.9 169 80.5
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 3.3e-73 278.9 167 80.8
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 9.5e-73 277.3 169 79.9
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.2e-72 276.9 169 78.7
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.6e-72 276.6 167 78.4
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.6e-72 276.6 169 80.5
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.6e-72 276.6 169 80.5
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.1e-72 276.2 168 81.0
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.1e-72 276.2 168 81.0
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.1e-72 276.2 169 81.1
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 3.6e-72 275.4 169 78.7
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 4.7e-72 275.0 169 76.9
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 4.7e-72 275.0 169 78.7
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 6.2e-72 274.6 169 78.1
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 6.2e-72 274.6 173 77.5
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 6.2e-72 274.6 169 77.5
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.4e-71 273.5 169 76.9
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.4e-71 273.5 149 91.3
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.4e-71 273.5 169 79.3
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 1.4e-71 273.5 169 76.9
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.8e-71 273.1 169 79.9
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.8e-71 273.1 167 78.4
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.8e-71 273.1 167 78.4
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.3e-71 272.7 152 90.8
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 3.1e-71 272.3 166 78.9
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 3.1e-71 272.3 169 76.9
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 3.1e-71 272.3 166 78.9
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 4.0e-71 271.9 169 76.9
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.0e-71 271.9 167 80.8
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 5.2e-71 271.6 169 78.1
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.2e-71 271.6 166 78.9
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.2e-71 271.6 168 79.8
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.2e-71 271.6 168 79.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 6.8e-71 271.2 168 79.8
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 8.9e-71 270.8 169 79.3
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 8.9e-71 270.8 169 78.1
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 8.9e-71 270.8 169 76.3
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 2.6e-70 269.2 167 82.0
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 5.8e-70 268.1 169 77.5
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 7.5e-70 267.7 169 79.3
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 9.9e-70 267.3 166 77.1
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.3e-69 266.9 169 78.1
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.7e-69 266.5 172 75.6
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.2e-69 266.2 169 76.9
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.1e-68 263.8 166 76.5
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.4e-68 263.5 182 72.5
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.9e-68 263.1 186 72.6
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 3.2e-68 262.3 168 82.1
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 4.1e-68 261.9 197 67.5
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 5.4e-68 261.5 192 69.8
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-67 260.0 183 71.0
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-67 259.6 183 71.0
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-67 259.6 183 71.0
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 2.1e-67 259.6 167 76.0
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.7e-67 259.2 169 78.7
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 4.6e-67 258.5 169 72.8
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 1.0e-66 257.3 149 83.9
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.3e-66 256.9 150 84.0
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.3e-66 256.1 132 97.7
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 3.9e-66 255.4 149 82.6
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 8.6e-66 254.2 207 63.8
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 8.6e-66 254.2 158 80.4
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.5e-65 253.4 169 69.8
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.5e-65 252.7 158 80.4
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 4.3e-65 251.9 149 81.9
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 7.3e-65 251.1 149 81.9
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 7.3e-65 251.1 148 81.1
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 9.6e-65 250.8 214 63.1
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.2e-64 250.4 168 75.0
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 3.6e-64 248.8 167 69.5
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 6.2e-64 248.1 166 75.3
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.1e-64 247.7 153 80.4
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.4e-63 246.9 149 77.2
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.4e-63 246.9 143 82.5
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-63 246.5 177 74.0
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 3.1e-63 245.7 169 72.8
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.5e-62 243.4 153 75.8
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 2.0e-62 243.0 145 80.7
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 3.8e-61 238.8 167 68.3
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.9e-61 238.4 147 78.2
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.7e-58 229.9 239 54.4
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 6.6e-58 228.0 168 66.1
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-57 227.3 156 74.4
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.9e-57 226.5 167 68.9
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 9.6e-57 224.2 148 81.8
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 6.9e-55 218.0 126 81.0
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 2.4e-52 209.5 124 79.8
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 3.2e-52 209.1 169 66.3
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 1.6e-51 206.8 124 85.5
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.3e-50 203.8 124 82.3
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 6.6e-50 201.4 157 62.4
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.5e-49 200.3 123 74.8
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 4.3e-49 198.7 191 55.0
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.1e-48 196.4 121 81.0
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 2.8e-48 196.1 121 80.2
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 2.8e-48 196.1 121 80.2
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 4.8e-48 195.3 166 63.3
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 6.2e-48 194.9 121 79.3
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.1e-47 192.6 123 78.0
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.2e-46 190.7 124 79.8
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.4e-45 184.5 141 68.8
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 3.2e-44 182.6 145 69.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.0e-42 177.6 136 62.5
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.3e-37 160.6 106 76.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 5.5e-36 155.2 90 83.3
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.1e-35 153.3 90 77.8
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-34 151.0 94 81.9
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 4.1e-31 139.0 83 84.3
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.3e-29 134.0 82 82.9
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.9e-28 130.2 112 59.8
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.9e-27 124.8 81 75.3
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.1e-26 122.1 87 66.7
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.3e-25 119.0 74 81.1
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 5.7e-25 118.6 93 61.3
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.7e-25 118.6 73 83.6
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-22 110.9 102 57.8
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.0e-21 107.8 64 84.4
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-19 100.5 65 81.5
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.1e-19 100.1 75 68.0
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 1.0e-18 97.8 138 38.4
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 9.1e-15 84.7 156 34.0
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 5.0e-13 79.0 108 50.0
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-12 77.8 49 77.6
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-12 77.8 49 77.6
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.8e-10 70.5 44 70.5
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 3.0e-10 69.7 166 30.1
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-06 57.4 38 63.2


User provided reference genes

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