Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 8.3e-200 700.3 383 100.0
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.3e-181 639.8 384 92.4
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 5.1e-181 637.9 384 91.7
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 6.6e-173 610.9 382 85.1
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 3.6e-171 605.1 382 86.1
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 2.0e-169 599.4 383 88.5
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 3.4e-169 598.6 384 88.3
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 4.8e-163 578.2 383 85.6
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 3.4e-161 572.0 383 84.1
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 3.4e-161 572.0 383 84.1
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 4.5e-161 571.6 383 84.9
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 7.1e-159 564.3 378 83.9
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.2e-153 547.0 382 80.6
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 7.6e-145 517.7 385 73.5
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.8e-141 506.5 382 76.2
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 5.9e-137 491.5 435 64.8
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 5.7e-132 474.9 387 70.3
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.2e-118 430.6 381 66.4
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 4.7e-118 428.7 394 65.0
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 3.8e-104 382.5 385 57.1
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 4.7e-102 375.6 386 60.1
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.3e-99 367.5 379 55.4
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.3e-99 367.5 379 57.3
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 4.9e-99 365.5 383 57.2
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 3.1e-98 362.8 387 55.6
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 7.0e-98 361.7 387 54.5
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 7.0e-98 361.7 379 57.0
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 1.6e-97 360.5 386 54.7
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.6e-97 360.5 380 56.3
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 4.5e-97 359.0 381 55.1
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.0e-96 357.8 384 55.2
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.7e-96 357.1 381 55.4
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 2.9e-96 356.3 389 55.5
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 3.8e-96 355.9 387 55.0
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 5.0e-96 355.5 385 55.1
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 6.6e-96 355.1 382 57.1
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 8.6e-96 354.8 383 54.3
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 8.6e-96 354.8 377 54.9
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 8.6e-96 354.8 383 55.9
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.5e-95 354.0 377 54.9
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 3.3e-95 352.8 385 54.3
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 4.3e-95 352.4 380 54.5
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 7.3e-95 351.7 385 54.3
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 7.3e-95 351.7 387 55.6
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 9.5e-95 351.3 402 52.7
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.2e-94 350.9 381 54.6
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 1.6e-94 350.5 383 54.8
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.1e-94 350.1 387 54.5
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.1e-94 350.1 387 54.5
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 3.6e-94 349.4 384 55.2
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 4.7e-94 349.0 382 53.9
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 6.1e-94 348.6 385 54.3
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 1.4e-93 347.4 385 54.8
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 1.8e-93 347.1 379 54.4
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.0e-93 346.3 381 55.6
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.0e-93 346.3 377 53.6
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 3.0e-93 346.3 387 55.8
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.2e-93 345.5 381 55.6
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.2e-93 345.5 382 52.9
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 6.8e-93 345.1 385 54.5
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 6.8e-93 345.1 380 54.2
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 8.9e-93 344.7 386 54.7
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 1.5e-92 344.0 378 55.3
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 2.6e-92 343.2 382 53.4
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 3.4e-92 342.8 399 51.9
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 5.7e-92 342.0 378 54.0
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 7.5e-92 341.7 380 53.2
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 2.2e-91 340.1 390 52.6
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 2.2e-91 340.1 375 54.1
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 2.2e-91 340.1 398 52.0
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.2e-91 340.1 390 51.0
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 3.7e-91 339.3 378 53.2
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.4e-90 336.7 396 53.5
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 2.4e-90 336.7 397 52.4
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 4.1e-90 335.9 380 51.8
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 7.0e-90 335.1 384 51.6
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 9.2e-90 334.7 387 51.2
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.6e-89 334.0 396 53.3
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.5e-89 332.8 383 53.5
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 4.6e-89 332.4 384 51.8
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 5.9e-89 332.0 384 52.9
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 3.0e-88 329.7 380 53.2
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 5.0e-88 328.9 384 52.6
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 5.0e-88 328.9 383 53.0
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.9e-87 327.0 398 49.2
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.5e-87 326.6 378 51.3
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 2.5e-87 326.6 378 51.6
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 9.5e-87 324.7 387 51.4
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.6e-86 323.9 386 52.6
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.6e-86 323.9 378 54.5
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 3.6e-86 322.8 396 49.0
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 3.6e-86 322.8 443 47.0
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 4.7e-86 322.4 378 49.5
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 8.0e-86 321.6 402 48.5
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.3e-85 320.1 377 50.4
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.3e-85 320.1 417 49.4
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 3.1e-85 319.7 385 52.5
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.5e-84 317.4 362 55.0
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 2.6e-84 316.6 383 51.4
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 3.4e-84 316.2 385 51.2
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 4.1e-82 309.3 385 54.0
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.6e-81 307.4 379 54.4
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 2.3e-80 303.5 411 48.2
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 6.6e-80 302.0 387 49.4
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.1e-79 301.2 390 50.5
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.2e-78 297.7 383 50.9
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 2.3e-77 293.5 388 50.8
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.2e-75 287.0 384 45.1
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 8.3e-75 285.0 366 46.7
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.4e-74 283.5 364 49.2
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.9e-72 276.2 376 48.1
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.5e-71 273.5 376 47.9
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 8.4e-67 258.5 379 45.4
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.5e-65 253.1 384 44.5
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 7.3e-63 245.4 398 40.2
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 7.8e-57 225.3 248 53.2
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 3.3e-55 219.9 245 54.3
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 3.6e-54 216.5 329 47.1
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 1.5e-52 211.1 447 36.0
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 6.0e-49 199.1 314 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 2.8e-46 190.3 365 37.3
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.8e-43 179.9 205 50.7
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 9.3e-42 175.3 302 45.4
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.6e-33 147.9 384 30.5
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 3.3e-31 140.2 166 51.2
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 1.4e-26 124.8 119 56.3
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 2.5e-26 124.0 124 55.6
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 1.8e-21 107.8 225 36.9
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 6.1e-17 92.8 55 83.6
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 2.0e-15 87.8 405 25.7
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 3.3e-15 87.0 431 25.3
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 5.7e-15 86.3 101 51.5
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 7.4e-15 85.9 67 61.2
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 2.4e-13 80.9 55 70.9
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 3.8e-11 73.6 50 72.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.5e-10 70.9 512 24.4
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 3.0e-08 63.9 74 48.6
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 2.6e-07 60.8 430 22.8


User provided reference genes

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