Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 8.1e-70 266.9 132 100.0
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.6e-49 199.5 100 96.0
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.0e-48 196.8 100 95.0
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 3.9e-48 194.9 100 94.0
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 3.9e-48 194.9 100 94.0
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 3.9e-48 194.9 100 94.0
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.9e-48 194.9 100 94.0
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 3.9e-48 194.9 100 94.0
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 5.1e-48 194.5 100 93.0
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 8.7e-48 193.7 100 93.0
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 8.7e-48 193.7 100 93.0
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.6e-46 189.5 100 91.0
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 4.8e-46 188.0 100 92.0
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 4.8e-46 188.0 100 91.0
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 2.4e-45 185.7 100 91.0
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 9.0e-45 183.7 100 90.0
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 8.4e-43 177.2 100 85.0
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 4.2e-42 174.9 100 84.0
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.1e-41 172.6 101 84.2
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.1e-37 158.7 100 74.0
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 9.0e-37 157.1 100 75.0
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.2e-36 156.8 100 74.0
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 1.2e-36 156.8 101 75.2
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 2.0e-36 156.0 101 74.3
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.0e-36 156.0 101 74.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.9e-36 154.5 101 72.3
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 7.6e-36 154.1 101 73.3
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 1.3e-35 153.3 101 71.3
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.7e-35 152.9 101 72.3
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.9e-34 149.4 101 70.3
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 3.2e-34 148.7 100 69.0
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.2e-34 148.3 101 71.3
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 4.2e-34 148.3 101 68.3
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 7.2e-34 147.5 100 70.0
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 9.3e-34 147.1 101 67.3
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 9.3e-34 147.1 101 67.3
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 9.3e-34 147.1 101 69.3
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.2e-33 146.7 101 67.3
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.2e-33 146.7 100 68.0
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.1e-33 146.0 101 69.3
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 2.1e-33 146.0 101 69.3
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 2.7e-33 145.6 101 65.3
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 2.7e-33 145.6 103 67.0
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 2.7e-33 145.6 101 67.3
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.6e-33 145.2 100 67.0
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.1e-33 144.4 100 67.0
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 6.1e-33 144.4 104 69.2
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 6.1e-33 144.4 100 68.0
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 6.1e-33 144.4 100 71.0
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.0e-32 143.7 100 67.0
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-32 143.3 100 66.0
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.3e-32 143.3 101 66.3
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 1.8e-32 142.9 100 67.0
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.8e-32 142.9 100 67.0
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 1.8e-32 142.9 100 68.0
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.8e-32 142.9 100 68.0
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 3.0e-32 142.1 101 65.3
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 3.0e-32 142.1 101 67.3
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 3.0e-32 142.1 101 67.3
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 5.1e-32 141.4 101 64.4
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 6.7e-32 141.0 100 66.0
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 8.7e-32 140.6 101 62.4
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 8.7e-32 140.6 100 70.0
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.5e-31 139.8 103 66.0
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.3e-31 138.7 100 67.0
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 3.3e-31 138.7 101 65.3
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 4.3e-31 138.3 101 66.3
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 5.7e-31 137.9 100 66.0
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 5.7e-31 137.9 101 64.4
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 7.4e-31 137.5 100 66.0
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 9.7e-31 137.1 98 67.3
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 9.7e-31 137.1 123 58.5
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 1.3e-30 136.7 100 64.0
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.3e-30 136.7 113 61.9
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.7e-30 136.3 100 66.0
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.7e-30 136.3 101 65.3
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.2e-30 136.0 101 65.3
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 2.8e-30 135.6 100 64.0
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.8e-30 134.8 103 64.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 4.8e-30 134.8 102 66.7
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 4.8e-30 134.8 102 66.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 4.8e-30 134.8 101 63.4
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 4.8e-30 134.8 101 66.3
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 6.3e-30 134.4 101 64.4
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 8.2e-30 134.0 101 65.3
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.4e-29 133.3 102 65.7
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.8e-29 132.9 103 62.1
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.8e-29 132.9 100 68.0
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.4e-29 132.5 100 64.0
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.4e-29 132.5 100 63.0
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 2.4e-29 132.5 100 63.0
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 2.4e-29 132.5 100 65.0
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 2.4e-29 132.5 98 65.3
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 3.1e-29 132.1 100 67.0
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 3.1e-29 132.1 100 66.0
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 5.3e-29 131.3 100 65.0
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.3e-29 131.3 100 63.0
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 5.3e-29 131.3 103 61.2
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 6.9e-29 131.0 103 63.1
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.9e-29 131.0 103 63.1
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.2e-28 130.2 100 62.0
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-28 129.8 103 62.1
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.0e-28 129.4 101 61.4
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.0e-28 129.4 100 63.0
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.0e-28 129.4 100 64.0
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 2.6e-28 129.0 100 64.0
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 2.6e-28 129.0 104 58.7
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 4.5e-28 128.3 104 62.5
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 4.5e-28 128.3 100 63.0
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.7e-28 127.5 101 60.4
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.9e-27 125.6 100 64.0
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.8e-27 125.2 106 61.3
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 5.0e-27 124.8 101 57.4
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 2.5e-26 122.5 102 58.8
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 5.5e-26 121.3 102 59.8
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.6e-25 118.6 101 56.4
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 7.9e-25 117.5 110 56.4
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.8e-24 116.3 84 63.1
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.8e-24 116.3 80 70.0
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 6.7e-24 114.4 103 61.2
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.1e-23 113.6 88 65.9
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 4.4e-23 111.7 106 56.6
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 4.4e-23 111.7 106 56.6
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 9.7e-23 110.5 83 68.7
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.3e-22 110.2 82 67.1
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 6.3e-22 107.8 100 56.0
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 5.3e-21 104.8 134 44.8
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 5.3e-21 104.8 106 54.7
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 2.6e-20 102.4 90 57.8
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.3e-19 100.1 110 49.1
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.4e-16 90.1 48 87.5
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 5.2e-16 88.2 72 58.3
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 7.4e-15 84.3 99 43.4
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 8.2e-14 80.9 49 71.4
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.0e-12 76.3 114 43.0


User provided reference genes

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