Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 1.0e-268 929.5 464 100.0
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 1.9e-267 925.2 464 99.6
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 4.7e-266 920.6 465 99.4
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 2.3e-260 901.7 464 96.8
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 4.3e-259 897.5 464 96.6
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 1.3e-250 869.4 463 93.3
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 4.0e-249 864.4 459 92.8
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.1e-246 856.3 464 91.2
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 1.2e-245 852.8 444 94.4
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 2.5e-243 845.1 464 89.7
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 2.1e-242 842.0 464 89.4
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 6.7e-236 820.5 468 86.5
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 2.8e-234 815.1 464 87.3
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 8.5e-207 723.8 459 75.8
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 3.2e-206 721.8 456 75.2
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 9.4e-206 720.3 455 75.2
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 2.7e-205 718.8 457 75.5
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 4.0e-204 714.9 453 75.3
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 5.2e-204 714.5 459 74.9
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 8.8e-204 713.8 457 75.1
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.3e-202 709.9 452 74.6
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 1.3e-202 709.9 453 75.5
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.8e-202 708.0 453 74.6
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.8e-201 706.1 452 74.8
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 5.3e-201 704.5 452 74.1
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 5.3e-201 704.5 457 75.5
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 7.0e-201 704.1 452 73.9
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 9.1e-201 703.7 461 74.2
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 2.0e-200 702.6 457 74.8
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 3.5e-200 701.8 452 73.9
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.3e-199 699.9 482 71.0
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 1.3e-199 699.9 462 73.6
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 3.8e-199 698.4 453 74.0
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 3.8e-199 698.4 458 73.6
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 6.5e-199 697.6 466 73.6
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 8.5e-199 697.2 452 74.1
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 1.1e-198 696.8 459 74.1
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 1.1e-198 696.8 455 73.8
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 1.1e-198 696.8 450 74.2
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 1.5e-198 696.4 461 71.8
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 1.5e-198 696.4 457 72.6
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 4.2e-198 694.9 454 73.8
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 5.5e-198 694.5 423 77.5
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 7.2e-198 694.1 458 72.7
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 7.2e-198 694.1 464 72.8
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 9.4e-198 693.7 461 72.7
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 9.4e-198 693.7 459 72.8
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 9.4e-198 693.7 452 73.0
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 1.6e-197 693.0 459 72.8
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 2.7e-197 692.2 445 74.4
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 4.7e-197 691.4 480 71.0
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 4.7e-197 691.4 447 74.3
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 6.1e-197 691.0 448 74.3
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 6.1e-197 691.0 448 74.3
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 1.0e-196 690.3 447 73.2
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 3.0e-196 688.7 447 73.2
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 4.0e-196 688.3 479 71.4
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.0e-195 686.0 499 67.7
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.0e-195 686.0 457 73.1
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 7.5e-195 684.1 478 70.1
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 4.8e-194 681.4 472 71.8
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 6.3e-194 681.0 451 71.2
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 2.4e-193 679.1 454 71.6
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 3.1e-193 678.7 459 69.7
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 3.1e-193 678.7 448 71.4
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 5.4e-193 677.9 447 72.5
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 7.0e-193 677.6 491 68.4
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.6e-192 676.4 422 75.8
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.6e-192 676.4 448 72.1
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 2.0e-192 676.0 457 69.4
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.7e-192 675.6 472 69.9
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 3.5e-192 675.2 448 71.9
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 7.7e-192 674.1 459 68.8
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 3.8e-191 671.8 452 70.8
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 8.5e-191 670.6 455 70.1
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 1.9e-190 669.5 447 71.4
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.2e-190 667.5 456 70.2
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 9.4e-190 667.2 450 70.7
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.2e-189 666.8 454 70.9
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.7e-189 665.6 461 69.6
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 4.0e-188 661.8 593 58.0
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 6.8e-188 661.0 466 69.5
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 6.8e-188 661.0 494 66.2
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 1.5e-187 659.8 450 69.6
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 7.5e-187 657.5 453 70.2
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 1.7e-186 656.4 477 65.2
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 2.8e-186 655.6 444 71.4
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 4.9e-186 654.8 456 69.7
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 7.0e-185 651.0 434 72.4
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 5.9e-184 647.9 459 68.4
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 7.7e-184 647.5 460 67.8
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 1.0e-183 647.1 529 60.9
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 9.5e-182 640.6 454 67.2
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.2e-181 640.2 424 71.0
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 2.8e-181 639.0 447 68.9
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 4.0e-180 635.2 452 69.0
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 4.1e-169 598.6 433 75.3
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 7.8e-168 594.3 382 74.6
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 5.8e-163 578.2 357 77.0
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 4.9e-162 575.1 373 70.8
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.6e-160 570.1 372 72.8
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 2.5e-158 562.8 453 60.3
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.1e-156 555.8 358 74.9
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 4.0e-156 555.4 452 63.1
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 9.6e-150 534.3 454 59.3
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 9.6e-150 534.3 292 87.7
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.6e-149 533.5 440 59.8
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 7.1e-145 518.1 447 57.5
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 4.6e-144 515.4 398 65.6
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.0e-143 514.2 449 59.5
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 2.4e-140 503.1 444 57.7
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 3.1e-140 502.7 468 54.7
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 3.4e-123 446.0 281 75.1
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 3.5e-120 436.0 436 53.4
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 4.3e-118 429.1 271 72.7
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.2e-104 384.4 493 44.2
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 2.5e-102 376.7 254 72.8
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 3.3e-102 376.3 253 66.4
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 5.5e-97 359.0 428 47.2
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 1.8e-92 344.0 535 40.6
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 6.5e-90 335.5 242 75.6
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.2e-88 331.3 249 67.5
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 4.5e-83 312.8 453 39.7
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 1.5e-81 307.8 195 84.1
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 7.0e-76 288.9 253 60.1
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.0e-75 287.3 242 62.0
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 2.7e-72 276.9 242 66.1
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 2.1e-64 250.8 162 73.5
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 8.3e-61 238.8 184 63.0
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 4.1e-60 236.5 177 67.8
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.7e-59 233.8 151 72.8
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 8.3e-53 212.2 139 76.3
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 2.3e-47 194.1 112 89.3
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.5e-41 174.9 115 67.0
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.4e-39 168.3 125 68.8
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 9.2e-36 155.6 117 65.0
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 1.6e-35 154.8 103 76.7
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.7e-34 151.4 115 67.8
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 3.3e-33 147.1 107 72.9
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.8e-31 141.4 343 31.2
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 4.0e-31 140.2 98 68.4
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 2.9e-29 134.0 91 73.6
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 9.3e-28 129.0 91 62.6
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 4.3e-25 120.2 71 88.7
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 4.3e-25 120.2 71 88.7
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 4.3e-25 120.2 71 88.7
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 1.2e-19 102.1 115 52.2
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 1.4e-15 88.6 66 63.6
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 4.0e-15 87.0 97 47.4
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 2.0e-14 84.7 44 90.9
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 4.5e-14 83.6 68 60.3
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 2.4e-12 77.8 306 28.4
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 3.0e-10 70.9 403 26.1
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 3.3e-09 67.4 43 76.7
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 7.4e-09 66.2 67 52.2
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.3e-08 65.5 37 83.8
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 1.3e-08 65.5 37 83.8
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 2.8e-08 64.3 42 69.0
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 3.7e-08 63.9 37 81.1
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.7e-08 63.9 56 58.9
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 4.8e-08 63.5 51 56.9
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 1.8e-07 61.6 38 71.1
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 6.9e-07 59.7 297 25.3
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 6.9e-07 59.7 196 29.6
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 3.4e-06 57.4 65 52.3
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 4.5e-06 57.0 438 23.3
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 7.6e-06 56.2 196 30.6


User provided reference genes

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