Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 1.3e-194 682.9 356 100.0
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 4.0e-132 475.3 320 82.5
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 2.8e-117 426.0 329 72.9
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 4.6e-112 408.7 329 70.2
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 3.9e-111 405.6 329 71.1
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 1.7e-109 400.2 325 69.2
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 1.4e-108 397.1 326 70.2
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 2.7e-104 382.9 326 69.6
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 6.1e-104 381.7 326 68.7
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 8.8e-103 377.9 327 69.1
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 4.4e-102 375.6 328 68.6
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 4.4e-102 375.6 329 68.7
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 2.6e-94 349.7 316 63.3
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.1e-76 291.2 310 58.7
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 7.7e-75 285.0 323 56.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 5.6e-73 278.9 336 58.0
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 4.9e-53 212.6 120 95.0
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.7e-51 206.8 182 67.0
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 1.3e-50 204.5 335 45.1
C04p07680 Brassica napus HOM05D004501 ORTHO05D023925 1.5e-49 201.1 115 87.8
BraA05t19626Z Brassica rapa HOM05D004501 ORTHO05D023925 3.1e-39 166.8 116 80.2
A05p06580 Brassica napus HOM05D004501 ORTHO05D023925 4.0e-39 166.4 116 80.2
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 6.2e-24 115.9 311 31.5
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 9.0e-23 112.1 352 32.1
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 2.0e-22 110.9 311 31.8
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.5e-22 109.8 370 30.8
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 9.9e-22 108.6 353 30.0
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.2e-21 107.5 352 32.1
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.9e-21 107.1 333 30.3
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 4.9e-21 106.3 351 31.6
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 6.4e-21 105.9 339 29.2
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 8.4e-21 105.5 352 31.5
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 2.1e-19 100.9 327 30.0
BcaB02g09086 Brassica carinata HOM05D004501 ORTHO05D023925 2.7e-19 100.5 50 100.0
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.7e-19 100.5 352 31.5
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.7e-19 100.5 361 30.5
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 3.5e-19 100.1 365 31.0
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.6e-19 99.8 355 29.0
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.3e-18 97.4 355 28.7
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 3.0e-18 97.1 330 30.9
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 5.1e-18 96.3 361 27.7
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 5.1e-18 96.3 347 27.7
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 6.7e-18 95.9 355 28.5
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 6.7e-18 95.9 330 29.7
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 8.7e-18 95.5 350 31.4
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.1e-17 95.1 355 28.5
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.9e-17 94.4 353 28.3
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 3.3e-17 93.6 352 30.1
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 4.3e-17 93.2 348 31.0
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 5.6e-17 92.8 349 29.8
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 5.6e-17 92.8 353 30.9
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 7.4e-17 92.4 341 27.0
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 7.4e-17 92.4 341 28.2
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 7.4e-17 92.4 323 29.7
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.3e-16 91.7 337 30.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 2.8e-16 90.5 52 86.5
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.7e-16 90.1 350 27.1
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 6.2e-16 89.4 355 31.0
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 6.2e-16 89.4 297 29.3
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 6.2e-16 89.4 324 29.6
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 8.1e-16 89.0 314 29.3
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.8e-15 87.8 318 30.2
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.8e-15 87.8 337 28.8
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.8e-15 87.8 362 29.8
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.4e-15 87.4 362 29.8
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 3.1e-15 87.0 349 30.1
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.9e-15 85.9 362 29.6
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 6.9e-15 85.9 312 27.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.5e-14 84.7 363 29.2
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.6e-14 84.0 304 29.9
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.6e-14 84.0 341 28.4
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 3.4e-14 83.6 340 30.3
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 4.5e-14 83.2 325 28.6
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 4.5e-14 83.2 325 27.4
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 4.5e-14 83.2 324 28.7
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 7.6e-14 82.4 345 28.1
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.0e-13 82.0 319 30.4
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.0e-13 82.0 318 28.3
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 1.7e-13 81.3 313 28.8
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 2.2e-13 80.9 292 30.1
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 2.9e-13 80.5 314 29.3
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 2.9e-13 80.5 312 28.2
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 3.8e-13 80.1 346 29.8
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 4.9e-13 79.7 345 27.5
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 8.4e-13 79.0 321 27.7
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.1e-12 78.6 344 27.9
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 4.2e-12 76.6 314 27.1
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 5.5e-12 76.3 321 28.7
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 5.5e-12 76.3 249 30.5
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 7.1e-12 75.9 314 26.4
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 9.3e-12 75.5 331 27.8
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.6e-11 74.7 347 27.4
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.6e-11 74.7 347 27.4
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 4.6e-11 73.2 346 26.0
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.3e-10 71.6 335 26.6
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.3e-10 71.6 139 32.4
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 2.3e-10 70.9 343 27.7
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 2.3e-10 70.9 316 27.8
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 3.9e-10 70.1 321 28.0
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 3.9e-10 70.1 341 25.5
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 3.9e-10 70.1 371 27.8
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 5.1e-10 69.7 346 25.7
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 6.7e-10 69.3 70 44.3
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.5e-09 68.2 350 25.4
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.9e-09 67.8 345 25.8
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 9.6e-09 65.5 326 26.4
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 2.8e-08 63.9 301 30.2
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 4.8e-08 63.2 92 39.1
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 6.3e-08 62.8 71 43.7
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.1e-07 62.0 109 37.6
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 4.1e-07 60.1 52 55.8
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 5.3e-07 59.7 105 38.1
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 5.3e-07 59.7 115 34.8
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 6.9e-07 59.3 319 25.4
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.2e-06 58.5 298 25.2
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.2e-06 58.5 320 26.2
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.2e-06 58.5 364 25.0
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.0e-06 57.8 165 29.7
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 4.5e-06 56.6 96 37.5
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.0e-05 55.5 358 26.8


User provided reference genes

Program Settings