Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1681.8 869 100.0
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 0.0e+00 1652.5 883 97.1
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1561.6 904 91.5
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1436.4 903 85.0
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1426.4 897 83.8
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1422.9 898 83.7
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 0.0e+00 1422.9 908 82.3
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 0.0e+00 1422.5 898 83.6
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1421.8 908 82.4
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 0.0e+00 1357.0 894 80.5
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 0.0e+00 1340.9 894 80.1
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 0.0e+00 1327.0 901 79.0
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 0.0e+00 1320.4 900 78.4
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 0.0e+00 1182.9 832 73.3
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 8.5e-301 1036.9 907 63.9
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 3.4e-257 892.1 770 65.2
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.7e-254 882.5 896 57.1
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.1e-234 817.4 561 75.2
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 3.0e-221 772.7 443 86.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.6e-206 723.8 850 46.8
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 2.7e-206 723.0 851 47.4
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 7.7e-201 704.9 852 46.8
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 3.6e-198 696.0 853 45.8
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.7e-195 687.2 856 44.2
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 4.1e-194 682.6 850 45.4
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 4.5e-193 679.1 856 44.0
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.9e-193 678.7 836 45.9
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 5.0e-192 675.6 866 44.3
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 4.2e-191 672.5 859 45.1
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 5.5e-191 672.2 854 45.8
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.2e-190 671.0 863 43.9
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.6e-190 670.6 899 43.5
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 3.6e-190 669.5 853 45.3
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 4.7e-190 669.1 854 44.7
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 1.1e-188 664.5 855 44.7
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 3.3e-188 662.9 849 44.1
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.3e-187 661.0 855 44.3
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.7e-187 660.6 854 44.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.2e-185 654.4 849 43.7
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 2.2e-184 650.2 856 43.2
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 3.8e-184 649.4 856 43.3
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 3.8e-184 649.4 856 43.2
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 4.2e-183 646.0 544 68.4
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 4.7e-182 642.5 849 43.5
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.0e-181 641.3 849 43.3
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 4.0e-181 639.4 857 42.8
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 5.2e-181 639.0 848 42.9
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 8.8e-181 638.3 843 43.9
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 9.7e-180 634.8 772 46.2
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 6.3e-179 632.1 816 44.5
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 6.3e-179 632.1 766 46.2
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.4e-178 630.9 860 42.1
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.4e-178 630.2 854 42.5
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 9.1e-178 628.2 848 43.6
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 2.0e-177 627.1 848 42.6
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.0e-177 627.1 848 42.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 5.0e-176 622.5 851 42.9
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 6.5e-176 622.1 844 42.4
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.5e-175 620.9 851 42.8
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-174 617.8 850 42.6
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.0e-173 614.8 858 42.2
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.8e-173 614.0 792 43.8
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.3e-173 613.6 778 44.1
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.0e-173 612.8 847 41.6
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 8.8e-173 611.7 840 43.0
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.5e-172 610.9 858 42.4
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 2.0e-172 610.5 806 43.7
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 9.8e-172 608.2 860 42.8
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-171 607.4 850 42.0
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 2.2e-171 607.1 788 42.5
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 7.7e-169 598.6 821 40.7
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 1.0e-168 598.2 852 42.6
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 2.2e-168 597.0 884 40.7
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 2.2e-168 597.0 866 40.5
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 6.5e-168 595.5 845 43.2
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.6e-166 590.9 850 41.8
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 4.7e-166 589.3 890 40.6
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 2.3e-165 587.0 850 40.5
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 4.0e-165 586.3 856 41.0
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 4.0e-165 586.3 950 39.6
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.5e-164 584.3 838 41.8
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 5.7e-164 582.4 469 70.6
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.1e-162 578.2 927 39.8
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.4e-162 577.0 850 40.7
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 9.1e-162 575.1 861 41.0
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 2.7e-161 573.5 842 39.4
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.7e-160 570.9 847 40.3
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 4.2e-159 566.2 862 39.4
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 5.6e-159 565.8 847 40.1
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-158 564.7 862 40.6
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 6.1e-158 562.4 845 39.5
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 6.1e-158 562.4 825 40.7
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.5e-156 557.8 857 41.1
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-155 554.7 861 40.1
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.7e-153 547.0 839 40.3
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.0e-152 545.0 845 38.0
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.4e-149 534.6 897 36.7
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 8.9e-149 531.9 847 38.5
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.5e-148 528.9 857 39.1
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.3e-147 528.1 861 38.2
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 8.3e-147 525.4 856 39.0
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 4.6e-145 519.6 925 36.6
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 4.4e-140 503.1 849 37.0
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 2.4e-138 497.3 724 41.3
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 5.4e-138 496.1 852 39.1
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 7.1e-138 495.7 517 51.8
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.1e-135 488.4 674 42.0
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 7.3e-135 485.7 862 37.1
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 3.2e-130 470.3 806 36.2
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 5.8e-124 449.5 754 38.2
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 4.0e-117 426.8 562 44.0
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.4e-114 417.5 1124 28.5
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 9.6e-111 405.6 413 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 6.2e-110 402.9 863 32.7
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 6.9e-109 399.4 467 46.0
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.6e-108 396.0 397 52.9
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 9.9e-108 395.6 872 32.3
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 3.8e-107 393.7 283 64.7
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 6.4e-107 392.9 241 86.3
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 7.9e-105 386.0 844 32.9
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 2.0e-100 371.3 1339 25.0
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 3.9e-96 357.1 285 61.8
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 5.0e-91 340.1 853 31.1
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.2e-89 335.5 363 46.8
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.6e-89 335.1 271 61.3
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 2.7e-73 281.2 624 31.1
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 5.3e-69 266.9 767 29.6
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-67 262.3 476 34.5
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.0e-64 251.1 139 88.5
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 5.2e-64 250.4 195 58.5
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 7.5e-63 246.5 1087 23.6
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 4.8e-62 243.8 351 40.2
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 8.2e-62 243.0 440 35.2
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.3e-61 240.4 321 41.4
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 8.5e-59 233.0 388 36.1
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.5e-59 233.0 178 62.9
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 2.7e-57 228.0 386 33.7
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 1.9e-50 205.3 223 66.4
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 6.1e-49 200.3 100 96.0
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.1e-49 200.3 356 36.5
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 6.1e-49 200.3 382 34.8
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.0e-48 198.0 419 31.3
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 3.0e-35 154.8 452 30.5
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 8.6e-35 153.3 341 32.3
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 8.0e-33 146.7 81 84.0
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 2.3e-32 145.2 249 34.5
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.2e-32 144.1 120 56.7
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 1.0e-27 129.8 88 64.8
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.1e-26 126.3 170 38.8
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.6e-25 122.5 84 63.1
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.6e-25 122.5 89 67.4
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.1e-24 119.8 153 44.4
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.4e-24 119.4 80 71.2
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 5.2e-24 117.5 127 44.1
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.4e-23 114.8 161 37.9
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 3.2e-21 108.2 253 27.7
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 4.1e-21 107.8 110 45.5
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 7.1e-21 107.1 53 90.6
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 5.1e-19 100.9 55 85.5
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.8e-17 95.1 158 34.2
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 8.1e-17 93.6 300 25.3
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 1.3e-14 86.3 91 46.2
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 7.1e-13 80.5 153 35.9
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.1e-12 79.0 115 33.9
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 4.6e-12 77.8 183 29.0
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.9e-10 72.4 93 37.6
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 7.3e-10 70.5 160 29.4
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 5.2e-08 64.3 84 41.7
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.2e-07 63.2 302 22.2
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.4e-06 57.0 122 36.9
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 8.4e-06 57.0 121 33.9


User provided reference genes

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