Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 0.0e+00 1152.5 608 100.0
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 5.7e-304 1047.0 622 92.1
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 6.0e-285 983.8 622 88.9
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.4e-249 866.3 623 77.4
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 6.1e-205 718.0 634 68.1
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 3.4e-203 712.2 630 67.1
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 7.5e-203 711.1 632 66.3
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 2.8e-202 709.1 630 67.0
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 2.4e-201 706.1 632 66.1
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 3.1e-201 705.7 628 68.0
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 4.5e-200 701.8 626 67.6
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 6.5e-199 698.0 657 65.3
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 1.1e-193 680.6 635 63.9
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 7.3e-190 667.9 625 61.0
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 7.5e-187 657.9 635 62.4
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 8.3e-186 654.4 633 62.1
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 1.2e-184 650.6 637 56.7
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.5e-174 617.1 634 56.9
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.9e-170 602.8 631 56.3
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 7.3e-166 588.2 624 58.2
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.7e-159 567.0 636 53.3
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 1.1e-153 547.7 595 55.3
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 8.7e-151 538.1 622 54.0
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 7.1e-145 518.5 600 53.3
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.7e-144 516.5 622 51.4
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 4.6e-144 515.8 613 51.7
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-131 474.2 624 52.9
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 2.5e-129 466.8 565 51.7
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 2.7e-128 463.4 630 45.2
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 6.0e-128 462.2 590 50.2
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.0e-127 461.5 626 45.0
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 1.3e-127 461.1 627 44.7
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.8e-127 460.7 624 49.4
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 6.7e-127 458.8 631 45.6
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 8.2e-125 451.8 634 44.0
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-124 451.4 465 59.4
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 1.7e-122 444.1 626 45.4
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 1.4e-121 441.0 618 43.0
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 2.7e-120 436.8 623 44.1
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.6e-120 436.0 621 43.3
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.3e-119 433.7 631 42.6
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 3.0e-119 433.3 631 42.6
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 3.0e-119 433.3 629 43.6
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 3.3e-118 429.9 605 42.6
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 9.7e-118 428.3 646 42.7
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.8e-116 424.1 563 48.1
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 9.1e-116 421.8 611 48.0
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 2.0e-115 420.6 648 42.0
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 2.0e-115 420.6 601 43.8
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 2.6e-115 420.2 630 43.0
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 2.6e-115 420.2 641 41.2
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 1.7e-114 417.5 417 57.3
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 6.5e-114 415.6 583 44.3
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 8.5e-114 415.2 625 44.3
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.4e-113 414.5 564 44.9
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.2e-113 412.9 640 42.7
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 5.5e-113 412.5 633 42.7
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.2e-112 411.4 640 41.9
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 1.6e-112 411.0 620 41.8
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 3.6e-112 409.8 640 42.5
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 3.6e-112 409.8 642 41.9
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 4.7e-112 409.5 643 41.5
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 1.8e-111 407.5 642 41.0
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 3.3e-110 403.3 638 41.2
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 3.3e-110 403.3 636 40.7
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 4.4e-110 402.9 640 40.5
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 7.4e-110 402.1 642 41.1
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 9.7e-110 401.7 615 42.8
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 9.7e-110 401.7 627 42.1
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 1.7e-109 401.0 627 40.4
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-108 396.7 620 42.1
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 1.5e-107 394.4 597 41.7
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 4.5e-107 392.9 629 40.1
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.7e-106 391.0 631 40.3
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 3.8e-106 389.8 632 40.8
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 3.8e-106 389.8 633 41.2
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 1.9e-105 387.5 503 45.3
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 1.2e-104 384.8 629 40.1
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 3.6e-104 383.3 628 40.6
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 4.7e-104 382.9 628 40.3
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.8e-103 380.9 632 39.9
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 5.2e-103 379.4 448 48.7
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 8.8e-103 378.6 622 40.0
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 2.6e-102 377.1 532 44.9
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 5.7e-102 375.9 634 39.6
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 7.4e-102 375.6 550 42.2
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 7.4e-102 375.6 616 39.4
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 1.7e-101 374.4 617 39.2
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 8.2e-101 372.1 501 43.1
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 5.3e-100 369.4 691 38.8
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 7.0e-100 369.0 634 39.9
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 1.6e-99 367.9 639 40.1
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.0e-99 367.5 542 42.4
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 2.6e-99 367.1 634 37.7
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 4.5e-99 366.3 610 43.0
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 5.9e-99 365.9 650 38.5
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 2.2e-98 364.0 641 37.9
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 2.9e-98 363.6 518 43.8
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 3.8e-98 363.2 726 35.0
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 6.5e-98 362.5 732 35.0
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 3.2e-97 360.1 640 38.8
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 3.2e-97 360.1 630 38.6
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 4.2e-97 359.8 624 37.5
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 5.5e-97 359.4 691 35.6
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 5.5e-97 359.4 631 39.6
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 7.2e-97 359.0 637 39.6
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 1.0e-95 355.1 628 38.4
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 5.2e-95 352.8 547 41.3
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 5.7e-94 349.4 593 40.6
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 5.7e-94 349.4 616 38.6
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 7.5e-94 349.0 720 34.2
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 7.5e-94 349.0 648 38.1
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 1.3e-93 348.2 612 39.1
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 1.7e-93 347.8 621 39.8
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 8.2e-93 345.5 600 39.2
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.0e-91 340.9 649 38.2
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 2.0e-91 340.9 623 37.9
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 5.0e-90 336.3 243 80.2
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 5.0e-90 336.3 629 38.3
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.9e-89 334.3 432 45.1
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 7.2e-89 332.4 624 38.9
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.2e-88 331.6 628 37.4
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.2e-88 331.6 631 38.2
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 1.6e-88 331.3 632 37.7
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.6e-88 330.1 632 37.7
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 1.0e-87 328.6 496 42.3
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.4e-86 323.6 643 37.2
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.7e-85 321.2 650 37.2
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 2.8e-85 320.5 703 33.1
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 3.7e-85 320.1 612 36.8
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 4.8e-85 319.7 620 36.0
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 7.0e-84 315.8 621 36.1
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 7.0e-84 315.8 621 36.1
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 9.1e-84 315.5 562 37.2
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 3.8e-82 310.1 593 37.6
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 2.5e-81 307.4 606 35.3
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 3.0e-79 300.4 583 36.7
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 4.1e-76 290.0 627 33.8
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 3.5e-75 287.0 593 35.1
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 6.6e-74 282.7 278 59.7
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 6.8e-71 272.7 624 32.1
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.2e-70 271.9 298 51.7
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 1.2e-62 245.4 587 32.5
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 9.5e-57 225.7 430 35.1
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 9.5e-57 225.7 430 35.1
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 9.5e-57 225.7 428 35.7
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 8.9e-55 219.2 558 31.9
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.6e-51 208.4 261 45.6
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 4.6e-51 206.8 261 49.0
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 3.4e-46 190.7 313 43.5
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 4.9e-45 186.8 425 32.5
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 1.9e-44 184.9 288 49.7
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 5.1e-42 176.8 400 34.5
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.6e-40 171.8 367 34.1
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.4e-36 157.9 313 36.1
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 8.7e-34 149.4 362 34.3
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.6e-32 144.1 324 35.2
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 4.6e-27 127.1 75 81.3
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 3.3e-25 120.9 311 31.8
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 3.3e-25 120.9 350 30.9
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.8e-23 115.2 297 31.6
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 3.4e-22 110.9 284 31.0
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 3.8e-21 107.5 119 50.4
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 5.5e-20 103.6 260 31.5
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 3.0e-18 97.8 75 56.0
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-17 95.5 171 36.3
C06p38600 Brassica napus HOM05D001833 ORTHO05D001776 6.2e-16 90.1 77 71.4
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 6.9e-15 86.7 114 47.4
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 3.8e-13 80.9 177 33.9
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 3.2e-12 77.8 77 51.9
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 2.7e-11 74.7 117 37.6
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 3.5e-11 74.3 207 33.8
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 1.4e-07 62.4 182 30.8
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 5.3e-07 60.5 163 29.4
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 4.5e-06 57.4 396 22.5


User provided reference genes

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