Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11116 Brassica carinata HOM05D006271 ORTHO05D008237 3.6e-165 585.1 355 100.0
BolC4t23562H Brassica oleracea HOM05D006271 ORTHO05D008237 4.6e-152 541.6 367 93.2
A05p15180 Brassica napus HOM05D006271 ORTHO05D008237 1.3e-151 540.0 358 89.7
BraA05t20437Z Brassica rapa HOM05D006271 ORTHO05D008237 1.2e-149 533.5 368 86.4
C04p20240 Brassica napus HOM05D006271 ORTHO05D008237 1.1e-145 520.4 323 99.7
BcaB02g10312 Brassica carinata HOM05D006271 ORTHO05D008237 1.5e-139 500.0 357 86.6
Sp4g12860 Schrenkiella parvula HOM05D006271 ORTHO05D008237 2.4e-124 449.5 357 79.0
Thhalv10016851m.g Eutrema salsugineum HOM05D006271 ORTHO05D008237 2.5e-121 439.5 364 75.0
CARHR123600 Cardamine hirsuta HOM05D006271 ORTHO05D008237 6.3e-109 398.3 366 71.3
Carub.0008s0813 Capsella rubella HOM05D006271 ORTHO05D008237 1.4e-105 387.1 373 70.5
AT2G30280 Arabidopsis thaliana HOM05D006271 ORTHO05D008237 2.7e-104 382.9 357 73.9
AL4G25130 Arabidopsis lyrata HOM05D006271 ORTHO05D008237 5.7e-102 375.2 360 71.1
Aa31LG5G6440 Aethionema arabicum HOM05D006271 ORTHO05D008237 8.8e-95 351.3 367 65.4
THA.LOC104800763 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 8.2e-85 318.2 273 65.9
Cpa.g.c32708 Carica papaya HOM05D006271 ORTHO05D008237 1.2e-70 271.2 268 57.1
Ciclev10001595m.g Citrus clementina HOM05D006271 ORTHO05D008237 2.4e-68 263.5 367 50.4
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 3.1e-68 263.1 260 56.2
CANSAT11G2184 Cannabis sativa HOM05D006271 ORTHO05D008237 5.4e-68 262.3 267 56.6
CiPaw.13G067000 Carya illinoinensis HOM05D006271 ORTHO05D008237 5.4e-68 262.3 261 53.3
RcHm_v2.0_Chr6g0268191 Rosa chinensis HOM05D006271 ORTHO05D008237 9.1e-68 261.5 269 55.0
Cfa011797 Carpinus fangiana HOM05D006271 ORTHO05D008237 1.2e-67 261.2 255 57.6
Atru.chr5.2170 Acer truncatum HOM05D006271 ORTHO05D008237 1.6e-67 260.8 268 55.2
arahy.Tifrunner.gnm1.ann1.4PY88X Arachis hypogaea HOM05D006271 ORTHO05D008237 1.6e-67 260.8 264 54.5
VMungo0464G0054 Vigna mungo HOM05D006271 ORTHO05D008237 4.5e-67 259.2 269 53.5
Eucgr.K01366 Eucalyptus grandis HOM05D006271 ORTHO05D008237 8.6e-66 255.0 267 55.1
THA.LOC104800777 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 1.1e-65 254.6 269 56.1
FAN13G0829 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.9e-65 253.8 258 56.2
GSVIVG01024608001 Vitis vinifera HOM05D006271 ORTHO05D008237 1.9e-65 253.8 269 52.8
arahy.Tifrunner.gnm1.ann1.0DE1FL Arachis hypogaea HOM05D006271 ORTHO05D008237 2.5e-65 253.4 265 54.0
FAN18G4385 Fragaria x ananassa HOM05D006271 ORTHO05D008237 3.3e-65 253.1 258 56.2
Phvul.008G153700 Phaseolus vulgaris HOM05D006271 ORTHO05D008237 4.2e-65 252.7 267 51.7
Glyma.19G024000 Glycine max HOM05D006271 ORTHO05D008237 3.6e-64 249.6 268 52.2
Ca_26670_v3 Cicer arietinum L. HOM05D006271 ORTHO05D008237 4.7e-64 249.2 252 55.2
TAR369G0029 Trochodendron aralioides HOM05D006271 ORTHO05D008237 2.3e-63 246.9 271 49.8
MD11G1060500 Malus domestica HOM05D006271 ORTHO05D008237 5.2e-63 245.7 269 52.4
TPR.G1139 Trifolium pratense HOM05D006271 ORTHO05D008237 8.9e-63 245.0 254 54.3
Hma1.2p1_0613F.1_g189190 Hydrangea macrophylla HOM05D006271 ORTHO05D008237 1.5e-62 244.2 267 50.9
Medtr7g033700 Medicago truncatula HOM05D006271 ORTHO05D008237 1.5e-62 244.2 259 54.4
Psat6g224880 Pisum sativum HOM05D006271 ORTHO05D008237 1.5e-62 244.2 260 53.5
Sc21g0004890 Simmondsia chinensis HOM05D006271 ORTHO05D008237 1.5e-62 244.2 271 52.8
FAN04G1993 Fragaria x ananassa HOM05D006271 ORTHO05D008237 2.0e-62 243.8 289 51.9
Nitab4.5_0003270g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 2.6e-62 243.4 273 51.3
MD03G1058300 Malus domestica HOM05D006271 ORTHO05D008237 1.7e-61 240.7 280 51.4
Medtr8g063090 Medicago truncatula HOM05D006271 ORTHO05D008237 2.2e-61 240.4 256 53.9
Duzib168G1576 Durio zibethinus HOM05D006271 ORTHO05D008237 8.3e-61 238.4 276 50.7
CAN.G1095.29 Capsicum annuum HOM05D006271 ORTHO05D008237 2.4e-60 236.9 270 49.3
Oeu032478.1 Olea europaea HOM05D006271 ORTHO05D008237 3.2e-60 236.5 284 49.3
Lj1g0015465 Lotus japonicus HOM05D006271 ORTHO05D008237 4.1e-60 236.1 263 51.7
Cc01_g15040 Coffea canephora HOM05D006271 ORTHO05D008237 1.2e-59 234.6 259 51.4
FAN08G2456 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.6e-59 234.2 289 50.5
TWI79G1094 Tripterygium wilfordii HOM05D006271 ORTHO05D008237 1.6e-59 234.2 268 50.0
Nitab4.5_0002768g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 2.0e-59 233.8 273 51.6
Sopen06g033780 Solanum pennellii HOM05D006271 ORTHO05D008237 3.5e-59 233.0 273 51.3
ClCG08G003170 Citrullus lanatus HOM05D006271 ORTHO05D008237 5.9e-59 232.3 273 50.2
Potri.019G126500 Populus trichocarpa HOM05D006271 ORTHO05D008237 1.0e-58 231.5 278 48.9
Prupe.6G045300 Prunus persica HOM05D006271 ORTHO05D008237 1.0e-58 231.5 273 52.4
TAR633G1937 Trochodendron aralioides HOM05D006271 ORTHO05D008237 1.0e-58 231.5 284 45.8
Lsat_1_v5_gn_9_14460 Lactuca sativa HOM05D006271 ORTHO05D008237 2.3e-58 230.3 276 48.6
Sed0013584 Sechium edule HOM05D006271 ORTHO05D008237 2.3e-58 230.3 279 49.8
Aqoxy4G02154 Aquilegia oxysepala HOM05D006271 ORTHO05D008237 5.0e-58 229.2 272 47.8
CsaV3_7G022840 Cucumis sativus L. HOM05D006271 ORTHO05D008237 5.0e-58 229.2 273 49.1
Manes.12G056300 Manihot esculenta HOM05D006271 ORTHO05D008237 5.0e-58 229.2 258 50.8
CSS0007493 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 8.6e-58 228.4 269 48.7
Lalb_Chr22g0360771 Lupinus albus HOM05D006271 ORTHO05D008237 8.6e-58 228.4 344 49.7
PGSC0003DMG400030380 Solanum tuberosum HOM05D006271 ORTHO05D008237 1.9e-57 227.3 286 46.9
CSS0050408 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 2.5e-57 226.9 261 48.7
Gorai.003G151300 Gossypium raimondii HOM05D006271 ORTHO05D008237 3.3e-57 226.5 274 49.3
Thecc.09G360000 Theobroma cacao HOM05D006271 ORTHO05D008237 4.3e-57 226.1 367 48.8
Sabra19G0124300 Salix brachista HOM05D006271 ORTHO05D008237 5.6e-57 225.7 269 48.7
PGR004G1333 Punica granatum HOM05D006271 ORTHO05D008237 7.3e-57 225.3 259 49.4
Gohir.D03G144000 Gossypium hirsutum HOM05D006271 ORTHO05D008237 2.8e-56 223.4 265 49.1
PSO017G5241 Papaver somniferum HOM05D006271 ORTHO05D008237 1.8e-55 220.7 274 47.1
COL.COLO4_11178 Corchorus olitorius HOM05D006271 ORTHO05D008237 2.3e-55 220.3 273 50.2
HanXRQChr08g0228551 Helianthus annuus HOM05D006271 ORTHO05D008237 2.3e-55 220.3 263 49.0
DCAR_018792 Daucus carota HOM05D006271 ORTHO05D008237 3.1e-55 219.9 270 47.4
Sabra19G0130300 Salix brachista HOM05D006271 ORTHO05D008237 3.1e-55 219.9 264 48.9
EL10Ac7g15870 Beta vulgaris HOM05D006271 ORTHO05D008237 5.2e-55 219.2 371 48.5
Rhsim13G0062500 Rhododendron simsii HOM05D006271 ORTHO05D008237 1.2e-54 218.0 262 48.9
FvH4_5g27270 Fragaria vesca HOM05D006271 ORTHO05D008237 4.4e-54 216.1 212 56.6
Gohir.A03G024500 Gossypium hirsutum HOM05D006271 ORTHO05D008237 7.5e-54 215.3 265 47.5
Medtr7g033685 Medicago truncatula HOM05D006271 ORTHO05D008237 1.3e-53 214.5 265 49.4
SGA_v2.0_scaffold77G25374 Striga asiatica HOM05D006271 ORTHO05D008237 2.2e-53 213.8 242 50.8
PSO170G5827 Papaver somniferum HOM05D006271 ORTHO05D008237 2.9e-53 213.4 274 46.0
Hund18965 Selenicereus undatus HOM05D006271 ORTHO05D008237 6.4e-53 212.2 266 47.0
Dinv12252 Davidia involucrata HOM05D006271 ORTHO05D008237 1.9e-52 210.7 218 52.8
MBI15_g26246_MAGBIO Magnolia biondii HOM05D006271 ORTHO05D008237 3.2e-52 209.9 261 46.4
ECA247G1693 Erigeron canadensis HOM05D006271 ORTHO05D008237 2.7e-51 206.8 266 46.6
SalBow2G1290 Salvia bowleyana HOM05D006271 ORTHO05D008237 5.0e-50 202.6 313 41.9
Migut.N00750 Erythranthe guttata HOM05D006271 ORTHO05D008237 6.2e-48 195.7 278 44.6
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.1e-47 194.9 269 42.4
unitig_60.g25562 Utricularia gibba HOM05D006271 ORTHO05D008237 1.4e-47 194.5 253 45.5
Lj1g0018317 Lotus japonicus HOM05D006271 ORTHO05D008237 1.8e-47 194.1 331 39.0
AUR62009716 Chenopodium quinoa HOM05D006271 ORTHO05D008237 6.8e-47 192.2 275 42.9
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 6.8e-47 192.2 243 46.1
QL01p025615 Quercus lobata HOM05D006271 ORTHO05D008237 6.8e-47 192.2 476 31.3
Peaxi162Scf00390g00528 Petunia axillaris HOM05D006271 ORTHO05D008237 2.0e-46 190.7 258 45.0
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 2.6e-46 190.3 265 42.3
CSS0039557 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 3.4e-46 189.9 260 44.6
Os11g0110066 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 6.4e-45 185.7 262 43.5
Os12g0110300 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 6.4e-45 185.7 271 43.5
PSO339G2991 Papaver somniferum HOM05D006271 ORTHO05D008237 8.6e-42 175.3 318 37.1
HPP92_015428 Vanilla planifolia HOM05D006271 ORTHO05D008237 2.5e-41 173.7 261 39.1
vmacro02904 Vaccinium macrocarpon HOM05D006271 ORTHO05D008237 2.3e-39 167.2 260 41.2
TPR.G1080 Trifolium pratense HOM05D006271 ORTHO05D008237 1.3e-37 161.4 242 42.6
QL01p025639 Quercus lobata HOM05D006271 ORTHO05D008237 2.3e-34 150.6 151 54.3
BolC4t27428H Brassica oleracea HOM05D006271 ORTHO05D023853 9.6e-33 145.2 206 49.5
CDE04G1879 Ceratophyllum demersum HOM05D006271 ORTHO05D008237 2.8e-32 143.7 206 40.3
Pp3c12_13690 Physcomitrium patens HOM05D006271 ORTHO05D008237 2.8e-32 143.7 290 37.6
Dinv44551 Davidia involucrata HOM05D006271 ORTHO05D008237 6.2e-32 142.5 157 48.4
unitig_60.g25741 Utricularia gibba HOM05D006271 ORTHO05D008237 6.2e-32 142.5 245 35.9
C04p59170 Brassica napus HOM05D006271 ORTHO05D023853 1.4e-31 141.4 206 48.5
SEGI_17267 Sequoiadendron giganteum HOM05D006271 ORTHO05D008237 5.2e-31 139.4 261 37.5
Nn2g11075 Nelumbo nucifera HOM05D006271 ORTHO05D008237 1.2e-27 128.3 173 42.8
Ah.07g202380 Amaranthus hybridus HOM05D006271 ORTHO05D008237 2.5e-25 120.6 193 43.0
BcaB06g28355 Brassica carinata HOM05D006271 ORTHO05D008237 1.7e-21 107.8 82 73.2
Zm00001eb404980 Zea mays HOM05D006271 ORTHO05D008237 2.2e-21 107.5 186 37.6
SHI19233 Sapria himalayana HOM05D006271 ORTHO05D008237 1.1e-20 105.1 165 43.6
Ah.07g202370 Amaranthus hybridus HOM05D006271 ORTHO05D000898 4.6e-19 99.8 85 56.5
PSO384G0354 Papaver somniferum HOM05D006271 ORTHO05D008237 3.0e-18 97.1 93 51.6
Mapoly0055s0007 Marchantia polymorpha HOM05D006271 ORTHO05D008237 3.9e-18 96.7 260 30.0
AagrBONN_evm.TU.Sc2ySwM_344.4002 Anthoceros agrestis HOM05D006271 ORTHO05D008237 9.6e-17 92.0 274 30.7
A04p23050 Brassica napus HOM05D006271 ORTHO05D023853 2.4e-15 87.4 206 37.9
BcaB05g24172 Brassica carinata HOM05D000064 ORTHO05D094673 1.3e-13 81.6 133 45.9
PSO170G2099 Papaver somniferum HOM05D006271 ORTHO05D008237 3.8e-13 80.1 206 31.6
PSO017G3993 Papaver somniferum HOM05D006271 ORTHO05D008237 1.1e-12 78.6 206 31.1
BraA04t17838Z Brassica rapa HOM05D006271 ORTHO05D023853 3.3e-09 67.0 107 46.7
BcaC02g08034 Brassica carinata HOM05D006271 ORTHO05D023853 1.4e-07 61.6 114 41.2
Sp6g37300 Schrenkiella parvula HOM05D006271 ORTHO05D008237 2.6e-06 57.4 87 47.1


User provided reference genes

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