Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 4.4e-39 164.1 78 100.0
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 1.8e-37 158.7 76 100.0
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 3.8e-27 124.4 76 82.9
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 3.8e-27 124.4 76 82.9
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 3.8e-27 124.4 76 82.9
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 3.8e-27 124.4 76 82.9
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 3.8e-27 124.4 76 82.9
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 3.8e-27 124.4 76 82.9
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 3.8e-27 124.4 76 82.9
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 8.5e-27 123.2 76 81.6
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 8.5e-27 123.2 76 81.6
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 1.1e-26 122.9 76 80.3
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 1.5e-26 122.5 76 81.6
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 1.5e-26 122.5 76 81.6
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 2.5e-26 121.7 76 80.3
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 2.5e-26 121.7 76 80.3
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 4.2e-26 120.9 76 80.3
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 4.2e-26 120.9 76 80.3
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 7.2e-26 120.2 76 78.9
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 6.1e-25 117.1 76 76.3
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 6.8e-24 113.6 76 75.0
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 8.8e-24 113.2 76 75.0
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.5e-23 112.5 76 72.4
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.5e-23 112.5 76 73.7
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 3.4e-23 111.3 76 72.4
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 4.4e-23 110.9 76 73.7
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 4.4e-23 110.9 75 73.3
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 5.7e-23 110.5 76 73.7
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 5.7e-23 110.5 76 72.4
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 5.7e-23 110.5 76 71.1
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 7.5e-23 110.2 76 71.1
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 9.8e-23 109.8 76 72.4
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 9.8e-23 109.8 76 72.4
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 9.8e-23 109.8 76 72.4
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 1.3e-22 109.4 76 71.1
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.3e-22 109.4 76 71.1
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 1.3e-22 109.4 76 72.4
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.3e-22 109.4 76 72.4
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 1.7e-22 109.0 76 71.1
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.7e-22 109.0 76 71.1
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 1.7e-22 109.0 76 69.7
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 2.2e-22 108.6 76 71.1
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 2.2e-22 108.6 76 71.1
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.2e-22 108.6 76 71.1
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 2.2e-22 108.6 76 72.4
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 2.2e-22 108.6 76 69.7
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 2.2e-22 108.6 76 69.7
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 2.2e-22 108.6 76 71.1
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 2.8e-22 108.2 76 71.1
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.8e-22 108.2 76 71.1
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.8e-22 108.2 76 71.1
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.8e-22 108.2 76 71.1
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 2.8e-22 108.2 76 71.1
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 2.8e-22 108.2 76 71.1
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 2.8e-22 108.2 76 71.1
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 3.7e-22 107.8 76 71.1
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 4.9e-22 107.5 76 68.4
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 4.9e-22 107.5 76 69.7
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 4.9e-22 107.5 76 69.7
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 6.3e-22 107.1 76 69.7
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 6.3e-22 107.1 76 69.7
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 6.3e-22 107.1 76 69.7
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 6.3e-22 107.1 75 70.7
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 6.3e-22 107.1 76 65.8
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 6.3e-22 107.1 76 67.1
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 6.3e-22 107.1 76 69.7
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 6.3e-22 107.1 76 69.7
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 8.3e-22 106.7 76 69.7
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 8.3e-22 106.7 76 72.4
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 8.3e-22 106.7 76 69.7
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 8.3e-22 106.7 76 68.4
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 8.3e-22 106.7 76 69.7
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 8.3e-22 106.7 75 69.3
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 8.3e-22 106.7 76 69.7
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 8.3e-22 106.7 76 71.1
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 8.3e-22 106.7 76 69.7
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 1.1e-21 106.3 73 69.9
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 1.1e-21 106.3 76 69.7
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 1.1e-21 106.3 76 69.7
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 1.1e-21 106.3 76 69.7
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 1.1e-21 106.3 76 69.7
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 1.1e-21 106.3 75 68.0
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 1.1e-21 106.3 76 71.1
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.4e-21 105.9 76 68.4
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 1.4e-21 105.9 76 68.4
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 1.4e-21 105.9 76 68.4
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 2.4e-21 105.1 76 68.4
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 2.4e-21 105.1 76 68.4
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 2.4e-21 105.1 76 69.7
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 3.1e-21 104.8 73 71.2
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 3.1e-21 104.8 76 68.4
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 3.1e-21 104.8 75 62.7
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 3.1e-21 104.8 76 68.4
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 3.1e-21 104.8 76 68.4
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 3.1e-21 104.8 76 69.7
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 4.1e-21 104.4 76 68.4
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 5.4e-21 104.0 73 68.5
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 7.0e-21 103.6 76 67.1
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 7.0e-21 103.6 92 62.0
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 9.1e-21 103.2 73 67.1
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 9.1e-21 103.2 76 65.8
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 9.1e-21 103.2 73 68.5
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 9.1e-21 103.2 75 68.0
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 1.6e-20 102.4 76 65.8
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 1.6e-20 102.4 75 66.7
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 2.0e-20 102.1 76 64.5
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 2.0e-20 102.1 76 64.5
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 2.0e-20 102.1 73 67.1
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 2.7e-20 101.7 76 65.8
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 2.7e-20 101.7 76 64.5
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 2.7e-20 101.7 76 64.5
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.5e-20 101.3 76 65.8
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 5.9e-20 100.5 76 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.7e-19 99.0 76 59.2
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 2.9e-19 98.2 70 68.6
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 6.6e-19 97.1 74 60.8
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 1.9e-18 95.5 73 65.8
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 3.3e-18 94.7 66 71.2
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 4.2e-18 94.4 62 77.4
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 5.5e-18 94.0 76 59.2
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 5.5e-18 94.0 75 57.3
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 1.6e-17 92.4 76 60.5
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.4e-16 89.4 73 53.4
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 2.0e-15 85.5 44 86.4
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 2.0e-15 85.5 44 86.4
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 4.9e-14 80.9 44 79.5
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 4.1e-13 77.8 44 79.5
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 2.5e-10 68.6 72 44.4
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 2.3e-08 62.0 34 79.4
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 2.3e-08 62.0 34 79.4
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 3.1e-08 61.6 49 63.3
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 8.3e-06 53.5 35 62.9


User provided reference genes

Program Settings