Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 4.0e-128 461.5 237 100.0
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 9.9e-127 456.8 238 99.6
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 9.9e-127 456.8 238 99.6
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 1.1e-114 416.8 241 92.9
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 6.7e-107 391.0 228 92.5
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 5.5e-93 344.7 242 81.8
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 3.6e-92 342.0 249 77.9
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 3.6e-92 342.0 249 77.9
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 3.3e-90 335.5 245 76.7
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 8.2e-81 304.3 251 70.9
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 3.8e-78 295.4 238 70.6
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 2.2e-73 279.6 239 69.0
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 2.2e-73 279.6 239 69.0
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 3.7e-73 278.9 244 70.1
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 4.8e-73 278.5 237 68.4
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 4.5e-71 271.9 254 67.3
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 2.9e-70 269.2 238 67.6
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 1.9e-69 266.5 243 66.7
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 2.0e-63 246.5 242 63.6
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 8.5e-62 241.1 219 66.2
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.1e-45 187.6 256 52.3
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.5e-37 160.6 257 50.6
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 7.3e-37 158.3 250 47.6
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 6.0e-31 138.7 231 42.4
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.2e-26 124.4 207 42.0
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 2.6e-26 123.2 229 42.4
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 3.2e-24 116.3 235 40.4
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 4.1e-24 115.9 215 37.7
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 5.4e-24 115.5 211 40.8
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 5.4e-24 115.5 235 40.0
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 9.2e-24 114.8 211 40.8
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 1.6e-23 114.0 235 37.0
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.6e-23 114.0 244 38.1
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 4.6e-23 112.5 198 40.9
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 4.6e-23 112.5 206 39.3
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 6.0e-23 112.1 245 37.1
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 7.8e-23 111.7 246 37.0
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.0e-22 111.3 237 35.9
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 1.0e-22 111.3 238 38.7
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 1.3e-22 110.9 210 40.5
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.3e-22 110.2 198 41.9
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 3.9e-22 109.4 217 39.2
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 5.1e-22 109.0 230 36.1
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 6.6e-22 108.6 199 41.2
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 8.6e-22 108.2 253 35.6
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 1.1e-21 107.8 214 36.9
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.5e-21 107.5 214 40.2
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.9e-21 107.1 198 41.4
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 1.9e-21 107.1 206 39.3
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 2.5e-21 106.7 219 37.4
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 5.6e-21 105.5 212 39.2
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 7.3e-21 105.1 238 35.3
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 1.6e-20 104.0 223 37.7
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.1e-20 103.6 238 33.6
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 2.8e-20 103.2 226 39.4
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 4.7e-20 102.4 241 35.3
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.2e-20 102.1 198 39.9
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 8.1e-20 101.7 208 38.9
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 8.1e-20 101.7 252 35.7
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 1.1e-19 101.3 198 40.9
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.8e-19 100.5 201 39.8
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.8e-19 100.5 195 39.5
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 2.4e-19 100.1 203 38.9
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 3.1e-19 99.8 207 37.7
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.1e-19 99.8 195 39.5
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 3.1e-19 99.8 239 34.7
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 4.0e-19 99.4 237 35.9
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 6.8e-19 98.6 194 38.1
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 2.6e-18 96.7 194 37.1
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 3.4e-18 96.3 233 36.1
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 9.9e-18 94.7 232 33.2
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 1.3e-17 94.4 213 36.2
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 1.3e-17 94.4 199 38.2
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 2.2e-17 93.6 233 36.1
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 4.9e-17 92.4 257 33.5
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 6.4e-17 92.0 200 35.5
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 6.4e-17 92.0 212 36.8
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 6.4e-17 92.0 210 36.7
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 8.4e-17 91.7 226 32.7
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.1e-16 91.3 179 36.9
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.1e-16 91.3 202 37.1
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.9e-16 90.5 218 34.9
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 2.4e-16 90.1 220 35.9
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 2.4e-16 90.1 222 32.0
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 3.2e-16 89.7 201 35.3
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 3.2e-16 89.7 205 35.1
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 4.2e-16 89.4 205 35.1
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 4.2e-16 89.4 203 36.0
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 5.4e-16 89.0 215 34.9
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 5.4e-16 89.0 201 34.3
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 7.1e-16 88.6 196 37.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 9.3e-16 88.2 222 35.1
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 9.3e-16 88.2 178 36.5
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 9.3e-16 88.2 194 38.1
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 1.2e-15 87.8 234 34.6
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 1.6e-15 87.4 193 34.7
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 1.6e-15 87.4 232 32.3
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 2.1e-15 87.0 169 36.7
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 2.7e-15 86.7 244 32.4
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 1.0e-14 84.7 191 37.2
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 1.0e-14 84.7 156 36.5
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 1.0e-14 84.7 171 36.8
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 1.3e-14 84.3 229 30.6
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 1.7e-14 84.0 222 32.4
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 2.3e-14 83.6 182 34.6
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 2.3e-14 83.6 200 34.5
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.3e-14 83.6 221 34.4
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.0e-14 83.2 179 35.8
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 3.9e-14 82.8 219 31.1
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 1.5e-13 80.9 206 33.5
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 1.5e-13 80.9 206 33.5
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 1.5e-13 80.9 220 31.8
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 2.5e-13 80.1 226 33.2
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 1.3e-12 77.8 184 34.8
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 1.6e-12 77.4 255 32.9
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 3.6e-12 76.3 117 39.3
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 4.8e-12 75.9 226 29.6
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 6.2e-12 75.5 125 37.6
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 8.1e-12 75.1 198 31.8
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 1.1e-11 74.7 246 30.5
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 2.4e-11 73.6 191 36.6
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.0e-11 72.8 278 29.1
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 9.0e-11 71.6 124 38.7
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 1.5e-10 70.9 167 34.1
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 2.0e-10 70.5 146 34.9
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 3.4e-10 69.7 227 30.4
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 4.4e-10 69.3 272 29.0
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 7.6e-10 68.6 241 29.9
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 9.9e-10 68.2 206 31.6
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 9.9e-10 68.2 233 32.2
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 1.7e-09 67.4 82 48.8
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 2.2e-09 67.0 197 32.5
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.9e-09 66.6 190 32.1
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 2.9e-09 66.6 222 32.9
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.9e-09 65.9 229 29.3
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 6.4e-09 65.5 137 34.3
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 6.4e-09 65.5 207 32.4
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 8.4e-09 65.1 213 29.6
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 8.4e-09 65.1 203 29.6
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 8.4e-09 65.1 226 33.6
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 1.4e-08 64.3 98 44.9
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 2.4e-08 63.5 184 34.2
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 2.4e-08 63.5 230 29.6
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 2.4e-08 63.5 183 32.8
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 3.2e-08 63.2 215 30.7
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.2e-08 63.2 202 30.2
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 5.4e-08 62.4 230 31.7
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 5.4e-08 62.4 161 33.5
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.4e-08 62.4 194 29.9
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.4e-08 62.4 202 29.7
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 5.4e-08 62.4 199 30.2
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 1.2e-07 61.2 221 31.7
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 2.1e-07 60.5 105 39.0
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 2.7e-07 60.1 230 28.7
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 2.7e-07 60.1 106 37.7
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 4.6e-07 59.3 224 30.8
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 4.6e-07 59.3 199 32.7
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 7.9e-07 58.5 239 30.1
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 7.9e-07 58.5 143 31.5
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 1.0e-06 58.2 205 31.2
SGA_v2.0_scaffold32G13060 Striga asiatica HOM05D003792 ORTHO05D003195 1.3e-06 57.8 207 30.4
Migut.B00353 Erythranthe guttata HOM05D011234 ORTHO05D003195 2.3e-06 57.0 233 30.5
unitig_8.g3371 Utricularia gibba HOM05D061388 ORTHO05D003195 3.0e-06 56.6 48 56.2
MELO3C018454.2 Cucumis melo HOM05D003792 ORTHO05D003195 3.9e-06 56.2 202 32.7
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 5.1e-06 55.8 221 30.8
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 5.1e-06 55.8 226 30.5
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 6.6e-06 55.5 236 31.4
Sed0006191 Sechium edule HOM05D003792 ORTHO05D003195 6.6e-06 55.5 202 31.2
Peaxi162Scf00016g01956 Petunia axillaris HOM05D011234 ORTHO05D003195 8.7e-06 55.1 244 29.9


User provided reference genes

Program Settings