Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 0.0e+00 1565.4 820 100.0
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 0.0e+00 1565.4 820 100.0
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 0.0e+00 1565.4 820 100.0
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 0.0e+00 1467.2 824 94.8
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 0.0e+00 1453.0 824 94.4
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 0.0e+00 1448.0 824 94.1
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 0.0e+00 1343.2 828 87.4
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 0.0e+00 1327.4 829 85.8
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 0.0e+00 1314.7 830 84.9
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 0.0e+00 1310.4 829 84.4
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 0.0e+00 1297.0 829 85.2
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 0.0e+00 1296.6 828 84.8
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 0.0e+00 1197.2 829 78.4
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 0.0e+00 1150.2 830 75.2
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 3.8e-274 948.3 832 61.4
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 6.4e-274 947.6 830 61.8
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 1.5e-270 936.4 830 60.5
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.4e-268 929.9 825 61.8
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 5.2e-268 927.9 828 61.7
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 3.4e-267 925.2 826 60.7
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.7e-266 922.9 827 60.3
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.4e-265 919.8 829 62.8
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 1.9e-265 919.5 832 61.7
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 9.3e-265 917.1 785 62.9
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 6.0e-264 914.4 820 60.7
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 6.0e-264 914.4 830 61.9
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 7.8e-264 914.1 829 60.0
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 2.3e-263 912.5 791 61.9
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.0e-263 912.1 829 60.9
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 2.1e-261 906.0 843 59.7
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 3.6e-261 905.2 829 60.1
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 8.1e-261 904.0 829 60.8
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.1e-260 903.7 830 60.2
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.4e-260 903.3 829 59.6
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 3.1e-260 902.1 838 61.2
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 5.8e-259 897.9 832 59.7
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 2.9e-258 895.6 829 60.3
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 6.4e-258 894.4 832 59.1
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 1.1e-257 893.6 829 59.3
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-257 893.6 829 60.6
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 1.4e-257 893.3 830 60.4
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.9e-257 892.9 829 60.6
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 3.2e-257 892.1 824 61.4
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 5.4e-257 891.3 799 61.2
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 9.3e-257 890.6 830 58.9
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.1e-254 883.6 829 58.9
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 9.6e-254 880.6 813 58.8
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 3.7e-253 878.6 794 59.6
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 4.8e-253 878.2 831 58.5
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-252 877.1 878 57.1
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 1.5e-251 873.2 831 57.6
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 2.0e-251 872.8 798 59.9
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 1.7e-250 869.8 798 60.9
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 2.2e-250 869.4 831 57.3
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 6.4e-250 867.8 793 59.4
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 7.1e-249 864.4 799 59.9
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 2.1e-248 862.8 798 60.4
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 7.9e-248 860.9 798 59.4
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.8e-247 859.8 793 60.8
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.8e-247 859.8 798 60.3
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 3.9e-247 858.6 815 60.4
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 2.5e-246 855.9 824 60.4
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 5.6e-246 854.7 824 59.2
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 7.4e-246 854.4 834 57.0
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 9.6e-246 854.0 798 58.9
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.3e-245 853.6 810 57.2
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 2.1e-245 852.8 824 59.1
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 3.4e-243 845.5 808 57.8
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 4.5e-243 845.1 797 59.6
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 5.8e-243 844.7 830 57.1
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 5.8e-243 844.7 824 56.4
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 1.0e-242 844.0 837 56.9
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 6.5e-242 841.3 798 56.9
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 8.4e-242 840.9 822 57.4
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 1.2e-240 837.0 800 58.9
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 7.9e-240 834.3 804 58.6
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 6.7e-239 831.2 824 55.9
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 6.7e-239 831.2 809 56.7
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 9.7e-238 827.4 823 57.1
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.3e-237 827.0 792 58.8
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 2.4e-236 822.8 831 57.2
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 3.1e-236 822.4 823 55.8
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 3.4e-235 818.9 801 58.2
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 4.5e-235 818.5 742 60.8
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 7.6e-235 817.8 831 55.0
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.2e-234 816.2 794 58.7
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.9e-233 813.1 793 56.6
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 4.6e-232 808.5 777 57.1
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 3.0e-231 805.8 858 54.2
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 4.8e-229 798.5 827 56.3
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 4.1e-228 795.4 808 54.6
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 7.4e-222 774.6 808 53.6
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.9e-210 736.1 805 53.2
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 3.4e-198 696.0 812 52.0
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 3.5e-195 686.0 830 49.9
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 7.2e-193 678.3 614 63.4
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.2e-180 636.3 655 54.2
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 5.4e-180 635.6 655 54.2
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 3.5e-179 632.9 496 71.6
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 1.5e-166 590.9 852 44.1
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 3.4e-166 589.7 652 54.3
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.1e-159 568.2 471 66.9
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 6.8e-159 565.5 460 68.3
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 4.4e-158 562.8 476 64.9
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.7e-157 560.8 494 61.9
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.4e-156 557.8 476 64.9
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 9.2e-156 555.1 473 65.3
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 3.0e-154 550.1 570 54.9
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 9.6e-153 545.0 489 60.7
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 9.6e-153 545.0 495 61.8
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 5.2e-151 539.3 458 64.8
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 9.9e-150 535.0 485 64.3
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 1.4e-148 531.2 455 62.9
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 7.8e-147 525.4 503 56.9
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.7e-146 524.2 457 63.7
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.5e-145 520.4 477 62.5
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.1e-143 515.0 459 61.2
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 3.1e-143 513.5 464 61.0
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 5.3e-143 512.7 464 61.0
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 6.9e-143 512.3 504 56.5
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 2.2e-141 507.3 504 55.8
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 5.4e-140 502.7 506 55.7
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.2e-139 501.5 495 55.4
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.2e-139 501.5 495 55.4
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 6.0e-139 499.2 467 57.8
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 1.3e-136 491.5 740 42.4
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 4.2e-132 476.5 505 51.7
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 6.0e-131 472.6 484 56.0
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 1.3e-130 471.5 461 59.7
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 7.1e-124 449.1 487 55.4
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 8.7e-122 442.2 687 43.2
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.3e-120 438.3 415 57.3
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.6e-120 438.0 757 39.4
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 3.4e-118 430.3 760 38.7
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.4e-111 408.3 685 39.6
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 1.7e-109 401.4 459 52.5
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 7.0e-95 352.8 298 65.1
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.4e-90 338.6 318 59.1
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 4.5e-86 323.6 464 41.4
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.0e-82 310.5 653 36.0
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.3e-77 295.4 266 62.4
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 4.9e-72 276.9 197 73.6
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.1e-71 273.9 219 69.4
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 8.0e-59 233.0 359 43.7
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 4.6e-54 217.2 816 27.0
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.5e-46 191.0 143 67.8
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.5e-46 191.0 143 67.8
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 7.8e-46 189.9 362 37.6
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 3.3e-44 184.5 136 65.4
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 4.0e-42 177.6 137 61.3
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 2.3e-37 161.8 149 55.7
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 6.6e-37 160.2 454 28.6
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.8e-34 152.1 90 80.0
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 7.9e-22 110.2 98 65.3
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.8e-19 100.9 156 42.3
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.4e-18 98.6 156 42.3
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.4e-15 89.4 70 55.7
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 7.4e-12 77.0 58 65.5
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.4e-10 72.8 95 44.2


User provided reference genes

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