Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10685 Brassica carinata HOM05D017242 ORTHO05D018726 8.8e-81 303.5 149 100.0
C04p26630 Brassica napus HOM05D017242 ORTHO05D018726 8.8e-73 276.9 136 100.0
BolC4t24142H Brassica oleracea HOM05D017242 ORTHO05D018726 8.8e-73 276.9 136 100.0
BolC2t08082H Brassica oleracea HOM05D017242 ORTHO05D018726 1.4e-70 269.6 136 97.8
C02p19500 Brassica napus HOM05D017242 ORTHO05D018726 3.1e-70 268.5 136 97.8
C08p39360 Brassica napus HOM05D017242 ORTHO05D018726 1.7e-68 262.7 141 94.3
A05p30000 Brassica napus HOM05D017242 ORTHO05D018726 5.6e-27 124.8 70 92.9
BcaC07g37976 Brassica carinata HOM05D017242 ORTHO05D018726 4.5e-16 88.6 74 74.3
BcaC06g33096 Brassica carinata HOM05D002913 ORTHO05D003323 1.2e-08 63.9 38 81.6
CARHR057210 Cardamine hirsuta HOM05D002913 ORTHO05D003323 3.4e-08 62.4 62 56.5
Carub.0003s0116 Capsella rubella HOM05D002913 ORTHO05D003323 6.4e-07 58.2 38 73.7
Cpa.g.sc76.42 Carica papaya HOM05D002913 ORTHO05D003323 6.4e-07 58.2 37 75.7
AT3G01020 Arabidopsis thaliana HOM05D002913 ORTHO05D003323 8.4e-07 57.8 38 73.7
SGA_v2.0_scaffold114G31829 Striga asiatica HOM05D002913 ORTHO05D003323 8.4e-07 57.8 50 62.0
Actinidia19325 Actinidia chinensis HOM05D002913 ORTHO05D003323 1.9e-06 56.6 39 69.2
Thhalv10028164m.g Eutrema salsugineum HOM05D002913 ORTHO05D003323 1.9e-06 56.6 33 81.8
SGA_v2.0_scaffold90G27906 Striga asiatica HOM05D002913 ORTHO05D003323 1.9e-06 56.6 36 75.0
AT4G04080 Arabidopsis thaliana HOM05D002913 ORTHO05D003323 3.2e-06 55.8 49 63.3
BraA09t38225Z Brassica rapa HOM05D002913 ORTHO05D003323 3.2e-06 55.8 57 56.1
Hma1.2p1_0592F.1_g185390 Hydrangea macrophylla HOM05D002913 ORTHO05D003323 3.2e-06 55.8 40 67.5
BcaB03g11724 Brassica carinata HOM05D002913 ORTHO05D003323 4.2e-06 55.5 38 71.1
Thhalv10022179m.g Eutrema salsugineum HOM05D002913 ORTHO05D003323 4.2e-06 55.5 32 84.4
Pp3c11_3040 Physcomitrium patens HOM05D002913 ORTHO05D003323 4.2e-06 55.5 33 81.8
CDE06G0765 Ceratophyllum demersum HOM05D002913 ORTHO05D003323 5.5e-06 55.1 33 78.8
CDE07G1259 Ceratophyllum demersum HOM05D002913 ORTHO05D003323 5.5e-06 55.1 33 78.8
Mapoly0158s0005 Marchantia polymorpha HOM05D002913 ORTHO05D003323 5.5e-06 55.1 33 78.8
Sabra12G0058500 Salix brachista HOM05D002913 ORTHO05D003323 5.5e-06 55.1 36 75.0
AL3G11250 Arabidopsis lyrata HOM05D002913 ORTHO05D003323 7.1e-06 54.7 38 68.4
Peaxi162Scf00009g00019 Petunia axillaris HOM05D002913 ORTHO05D003323 7.1e-06 54.7 39 74.4
Pp3c2_36100 Physcomitrium patens HOM05D002913 ORTHO05D003323 7.1e-06 54.7 33 78.8
SGA_v2.0_scaffold25G10836 Striga asiatica HOM05D002913 ORTHO05D003323 7.1e-06 54.7 36 72.2
BcaNung03752 Brassica carinata HOM05D002913 ORTHO05D003323 9.3e-06 54.3 38 68.4
DCAR_026140 Daucus carota HOM05D002913 ORTHO05D003323 9.3e-06 54.3 38 71.1
Manes.06G105500 Manihot esculenta HOM05D002913 ORTHO05D003323 9.3e-06 54.3 36 72.2
Nitab4.5_0000514g0140 Nicotiana tabacum HOM05D002913 ORTHO05D003323 9.3e-06 54.3 39 74.4
Os05g0568100 Oryza sativa ssp. japonica HOM05D002913 ORTHO05D003323 9.3e-06 54.3 36 75.0
SMO301G0069 Selaginella moellendorffii HOM05D002913 ORTHO05D003323 9.3e-06 54.3 32 81.2
Solyc03g112900.3 Solanum lycopersicum HOM05D002913 ORTHO05D003323 9.3e-06 54.3 36 75.0


User provided reference genes

Program Settings