Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10471 Brassica carinata HOM05D000530 ORTHO05D027685 6.3e-60 233.8 110 100.0
C04p28490 Brassica napus HOM05D000530 ORTHO05D027685 1.9e-16 89.4 65 73.8
BolC4t24393H Brassica oleracea HOM05D000530 ORTHO05D027685 1.9e-16 89.4 65 73.8
Sp4g22250 Schrenkiella parvula HOM05D000530 ORTHO05D003341 3.1e-14 82.0 84 59.5
BcaB02g09069 Brassica carinata HOM05D000530 ORTHO05D003341 4.0e-14 81.6 84 58.3
BcaC01g05453 Brassica carinata HOM05D000530 ORTHO05D003341 5.2e-14 81.3 46 89.1
A03p22370 Brassica napus HOM05D000530 ORTHO05D003341 5.2e-14 81.3 46 89.1
C03p26510 Brassica napus HOM05D000530 ORTHO05D003341 5.2e-14 81.3 46 89.1
BolC3t15037H Brassica oleracea HOM05D000530 ORTHO05D003341 5.2e-14 81.3 46 89.1
BraA03t11467Z Brassica rapa HOM05D000530 ORTHO05D003341 5.2e-14 81.3 46 89.1
Thhalv10016416m.g Eutrema salsugineum HOM05D000530 ORTHO05D003341 5.2e-14 81.3 46 89.1
BcaB01g03580 Brassica carinata HOM05D000530 ORTHO05D003341 6.9e-14 80.9 46 89.1
Aa31LG5G19680 Aethionema arabicum HOM05D000530 ORTHO05D003341 1.2e-13 80.1 46 87.0
A05p06480 Brassica napus HOM05D000530 ORTHO05D003341 1.2e-13 80.1 46 87.0
BraA05t19616Z Brassica rapa HOM05D000530 ORTHO05D003341 1.2e-13 80.1 46 87.0
BcaB02g09068 Brassica carinata HOM05D000530 ORTHO05D003341 2.6e-13 79.0 46 84.8
C04p07560 Brassica napus HOM05D000530 ORTHO05D003341 2.6e-13 79.0 46 84.8
BolC4t22373H Brassica oleracea HOM05D000530 ORTHO05D003341 2.6e-13 79.0 46 84.8
CARHR134860 Cardamine hirsuta HOM05D000530 ORTHO05D003341 4.4e-13 78.2 46 87.0
BcaB06g29117 Brassica carinata HOM05D000530 ORTHO05D003341 1.7e-12 76.3 46 82.6
THA.LOC104824304 Tarenaya hassleriana HOM05D000530 ORTHO05D003341 2.9e-12 75.5 46 80.4
Aa31LG10G10790 Aethionema arabicum HOM05D000530 ORTHO05D003341 3.8e-12 75.1 46 82.6
Thhalv10027610m.g Eutrema salsugineum HOM05D000530 ORTHO05D027685 4.9e-12 74.7 43 83.7
THA.LOC104810070 Tarenaya hassleriana HOM05D000530 ORTHO05D003341 6.4e-12 74.3 46 80.4
AL4G37520 Arabidopsis lyrata HOM05D000530 ORTHO05D003341 1.1e-11 73.6 46 82.6
Carub.0004s2207 Capsella rubella HOM05D000530 ORTHO05D003341 1.4e-11 73.2 46 82.6
AT2G39940 Arabidopsis thaliana HOM05D000530 ORTHO05D003341 1.9e-11 72.8 46 82.6
THA.LOC104809767 Tarenaya hassleriana HOM05D000530 ORTHO05D003341 1.9e-11 72.8 44 79.5
C04p67670 Brassica napus HOM05D000530 ORTHO05D003341 2.4e-11 72.4 46 80.4
A04p30200 Brassica napus HOM05D000530 ORTHO05D003341 3.2e-11 72.0 84 52.4
BraA04t18489Z Brassica rapa HOM05D000530 ORTHO05D003341 3.2e-11 72.0 84 52.4
A04p30190 Brassica napus HOM05D000530 ORTHO05D003341 5.4e-11 71.2 81 51.9
C04p67660 Brassica napus HOM05D000530 ORTHO05D003341 5.4e-11 71.2 81 53.1
BraA04t18490Z Brassica rapa HOM05D000530 ORTHO05D003341 5.4e-11 71.2 81 51.9
BcaC02g07380 Brassica carinata HOM05D000530 ORTHO05D003341 9.3e-11 70.5 46 76.1
BolC4t28268H Brassica oleracea HOM05D000530 ORTHO05D003341 9.3e-11 70.5 46 76.1
Cpa.g.sc19.214 Carica papaya HOM05D000530 ORTHO05D003341 9.3e-11 70.5 46 76.1
BcaC02g07384 Brassica carinata HOM05D000530 ORTHO05D003341 1.2e-10 70.1 81 51.9
BolC4t28270H Brassica oleracea HOM05D000530 ORTHO05D003341 1.2e-10 70.1 81 51.9
THA.LOC104806471 Tarenaya hassleriana HOM05D000530 ORTHO05D003341 3.5e-10 68.6 52 65.4
Peaxi162Scf00401g00117 Petunia axillaris HOM05D000530 ORTHO05D003341 3.3e-08 62.0 43 69.8
Gohir.D06G170200 Gossypium hirsutum HOM05D000530 ORTHO05D020806 5.6e-08 61.2 44 68.2
CSS0007560 Camellia sinensis var. sinensis HOM05D000530 ORTHO05D003341 9.6e-08 60.5 46 65.2
CSS0028417 Camellia sinensis var. sinensis HOM05D000530 ORTHO05D003341 9.6e-08 60.5 46 65.2
Actinidia29676 Actinidia chinensis HOM05D000530 ORTHO05D003341 1.6e-07 59.7 44 65.9
Gohir.A10G229500 Gossypium hirsutum HOM05D000530 ORTHO05D003341 2.1e-07 59.3 44 63.6
Gohir.D10G243500 Gossypium hirsutum HOM05D000530 ORTHO05D003341 2.1e-07 59.3 44 63.6
Gorai.011G279900 Gossypium raimondii HOM05D000530 ORTHO05D003341 2.1e-07 59.3 44 63.6
HanXRQChr14g0459941 Helianthus annuus HOM05D000530 ORTHO05D003341 2.1e-07 59.3 46 65.2
MBI15_g41441_MAGBIO Magnolia biondii HOM05D000530 ORTHO05D003341 2.1e-07 59.3 46 60.9
Sed0016382 Sechium edule HOM05D000530 ORTHO05D003341 2.1e-07 59.3 46 65.2
Nitab4.5_0000737g0010 Nicotiana tabacum HOM05D000530 ORTHO05D003341 2.8e-07 58.9 46 60.9
RcHm_v2.0_Chr1g0369351 Rosa chinensis HOM05D000530 ORTHO05D003341 2.8e-07 58.9 43 65.1
RcHm_v2.0_Chr1g0369391 Rosa chinensis HOM05D000045 ORTHO05D000067 2.8e-07 58.9 43 65.1
Aqoxy4G02666 Aquilegia oxysepala HOM05D000530 ORTHO05D003341 3.6e-07 58.5 81 45.7
Lsat_1_v5_gn_8_12401 Lactuca sativa HOM05D000530 ORTHO05D003341 3.6e-07 58.5 46 67.4
Lj8C72G3 Lonicera japonica HOM05D000530 ORTHO05D003341 3.6e-07 58.5 81 48.1
arahy.Tifrunner.gnm1.ann1.JSKR0X Arachis hypogaea HOM05D000530 ORTHO05D003341 4.8e-07 58.2 86 44.2
arahy.Tifrunner.gnm1.ann1.QG43ZZ Arachis hypogaea HOM05D000530 ORTHO05D003341 4.8e-07 58.2 86 44.2
Nn2g13617 Nelumbo nucifera HOM05D000530 ORTHO05D003341 4.8e-07 58.2 43 65.1
Thecc.10G026300 Theobroma cacao HOM05D000530 ORTHO05D003341 4.8e-07 58.2 46 63.0
CANSAT56G0011 Cannabis sativa HOM05D000530 ORTHO05D003341 6.2e-07 57.8 43 65.1
Cfa001368 Carpinus fangiana HOM05D000530 ORTHO05D003341 6.2e-07 57.8 43 67.4
Nitab4.5_0006674g0010 Nicotiana tabacum HOM05D000530 ORTHO05D003341 6.2e-07 57.8 46 60.9
Actinidia13917 Actinidia chinensis HOM05D000530 ORTHO05D003341 8.1e-07 57.4 44 63.6
Dinv20954 Davidia involucrata HOM05D000530 ORTHO05D003341 8.1e-07 57.4 43 62.8
Dinv20989 Davidia involucrata HOM05D000530 ORTHO05D003341 8.1e-07 57.4 43 62.8
Migut.F01428 Erythranthe guttata HOM05D000530 ORTHO05D003341 8.1e-07 57.4 88 45.5
Actinidia00933 Actinidia chinensis HOM05D000530 ORTHO05D003341 1.1e-06 57.0 43 65.1
CSS0021356 Camellia sinensis var. sinensis HOM05D000530 ORTHO05D003341 1.1e-06 57.0 81 43.2
CiPaw.01G295600 Carya illinoinensis HOM05D000530 ORTHO05D003341 1.1e-06 57.0 46 63.0
Gohir.A05G316300 Gossypium hirsutum HOM05D000530 ORTHO05D003341 1.1e-06 57.0 44 63.6
Gohir.D04G066700 Gossypium hirsutum HOM05D000530 ORTHO05D003341 1.1e-06 57.0 44 63.6
Gorai.012G075700 Gossypium raimondii HOM05D000530 ORTHO05D003341 1.1e-06 57.0 44 63.6
Prupe.2G246000 Prunus persica HOM05D000530 ORTHO05D003341 1.1e-06 57.0 43 65.1
TAR369G0771 Trochodendron aralioides HOM05D000530 ORTHO05D003341 1.1e-06 57.0 43 65.1
TAR623G1129 Trochodendron aralioides HOM05D000530 ORTHO05D003341 1.1e-06 57.0 43 65.1
arahy.Tifrunner.gnm1.ann1.3DA9LK Arachis hypogaea HOM05D000530 ORTHO05D003341 1.4e-06 56.6 43 62.8
arahy.Tifrunner.gnm1.ann1.RTE7SH Arachis hypogaea HOM05D000530 ORTHO05D003341 1.4e-06 56.6 43 65.1
arahy.Tifrunner.gnm1.ann1.U5S3ED Arachis hypogaea HOM05D000530 ORTHO05D003341 1.4e-06 56.6 43 65.1
DCAR_011788 Daucus carota HOM05D000530 ORTHO05D003341 1.4e-06 56.6 42 69.0
DCAR_027555 Daucus carota HOM05D000530 ORTHO05D003341 1.4e-06 56.6 43 67.4
Dinv34424 Davidia involucrata HOM05D000530 ORTHO05D003341 1.4e-06 56.6 81 43.2
Lsat_1_v5_gn_9_61461 Lactuca sativa HOM05D000530 ORTHO05D003341 1.4e-06 56.6 43 65.1
PGR044G1911 Punica granatum HOM05D000530 ORTHO05D003341 1.4e-06 56.6 43 65.1
Rhsim03G0139900 Rhododendron simsii HOM05D000530 ORTHO05D003341 1.4e-06 56.6 43 67.4
Hund13831 Selenicereus undatus HOM05D000530 ORTHO05D003341 1.4e-06 56.6 46 58.7
Sc11g0007280 Simmondsia chinensis HOM05D000530 ORTHO05D003341 1.4e-06 56.6 43 65.1
Actinidia33945 Actinidia chinensis HOM05D000530 ORTHO05D003341 1.8e-06 56.2 46 65.2
Ah.16g103090 Amaranthus hybridus HOM05D000530 ORTHO05D003341 1.8e-06 56.2 46 56.5
Aqoxy4G02665 Aquilegia oxysepala HOM05D000530 ORTHO05D003341 1.8e-06 56.2 43 62.8
MSTRG.230 Avicennia marina HOM05D000530 ORTHO05D003341 1.8e-06 56.2 44 68.2
Gohir.D02G072600 Gossypium hirsutum HOM05D000530 ORTHO05D003341 1.8e-06 56.2 44 61.4
Gorai.005G081800 Gossypium raimondii HOM05D000530 ORTHO05D003341 1.8e-06 56.2 44 61.4
TWI09G0590 Tripterygium wilfordii HOM05D000530 ORTHO05D003341 1.8e-06 56.2 44 63.6
Atru.chr12.244 Acer truncatum HOM05D000530 ORTHO05D003341 2.4e-06 55.8 46 63.0
CiPaw.02G189700 Carya illinoinensis HOM05D000530 ORTHO05D003341 2.4e-06 55.8 46 58.7
CDE02G1856 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 2.4e-06 55.8 43 58.1
Duzib114G0470 Durio zibethinus HOM05D000530 ORTHO05D003341 2.4e-06 55.8 46 63.0
Hma1.2p1_0026F.1_g017020 Hydrangea macrophylla HOM05D000530 ORTHO05D003341 2.4e-06 55.8 43 65.1
LjContig00357g0020173 Lotus japonicus HOM05D000530 ORTHO05D003341 2.4e-06 55.8 43 62.8
Oeu006651.1 Olea europaea HOM05D000530 ORTHO05D003341 2.4e-06 55.8 47 66.0
Oeu006652.1 Olea europaea HOM05D000530 ORTHO05D003341 2.4e-06 55.8 47 66.0
HPP92_018193 Vanilla planifolia HOM05D000530 ORTHO05D003341 2.4e-06 55.8 81 44.4
arahy.Tifrunner.gnm1.ann1.C2JUAG Arachis hypogaea HOM05D000530 ORTHO05D003341 3.1e-06 55.5 43 62.8
Gohir.A02G066700 Gossypium hirsutum HOM05D000530 ORTHO05D003341 3.1e-06 55.5 44 61.4
HanXRQChr14g0459951 Helianthus annuus HOM05D000530 ORTHO05D003341 3.1e-06 55.5 46 63.0
CAN.G1617.2 Capsicum annuum HOM05D000530 ORTHO05D003341 4.0e-06 55.1 43 65.1
MELO3C025152.2 Cucumis melo HOM05D000530 ORTHO05D003341 4.0e-06 55.1 81 45.7
MSTRG.27350 Avicennia marina HOM05D000530 ORTHO05D003341 5.3e-06 54.7 43 65.1
ClCG07G003980 Citrullus lanatus HOM05D000530 ORTHO05D003341 5.3e-06 54.7 46 63.0
Ciclev10031013m.g Citrus clementina HOM05D000530 ORTHO05D003341 5.3e-06 54.7 44 63.6
Cc02_g06930 Coffea canephora HOM05D000530 ORTHO05D003341 5.3e-06 54.7 46 60.9
Duzib106G0489 Durio zibethinus HOM05D000530 ORTHO05D003341 5.3e-06 54.7 44 63.6
ECA232G1693 Erigeron canadensis HOM05D000530 ORTHO05D003341 5.3e-06 54.7 46 60.9
FAN03G0778 Fragaria x ananassa HOM05D000530 ORTHO05D003341 5.3e-06 54.7 44 59.1
HanXRQChr07g0202671 Helianthus annuus HOM05D000530 ORTHO05D003341 5.3e-06 54.7 46 58.7
Nn2g11379 Nelumbo nucifera HOM05D000530 ORTHO05D003341 5.3e-06 54.7 42 69.0
Phvul.001G240400 Phaseolus vulgaris HOM05D000530 ORTHO05D003341 5.3e-06 54.7 43 62.8
vmacro06996 Vaccinium macrocarpon HOM05D000530 ORTHO05D003341 5.3e-06 54.7 43 65.1
CsaV3_5G008910 Cucumis sativus L. HOM05D000530 ORTHO05D003341 6.9e-06 54.3 81 44.4
Glyma.14G062100 Glycine max HOM05D000530 ORTHO05D003341 6.9e-06 54.3 43 65.1
Lsat_1_v5_gn_2_122000 Lactuca sativa HOM05D000530 ORTHO05D003341 6.9e-06 54.3 43 62.8
Potri.008G064400 Populus trichocarpa HOM05D000530 ORTHO05D003341 6.9e-06 54.3 44 61.4
Sabra10G0148500 Salix brachista HOM05D000530 ORTHO05D003341 6.9e-06 54.3 43 65.1
COL.COLO4_25663 Corchorus olitorius HOM05D000530 ORTHO05D003341 9.0e-06 53.9 44 59.1
FvH4_7g24000 Fragaria vesca HOM05D000530 ORTHO05D003341 9.0e-06 53.9 44 59.1
FAN06G2003 Fragaria x ananassa HOM05D000530 ORTHO05D003341 9.0e-06 53.9 44 59.1
HanXRQChr08g0222241 Helianthus annuus HOM05D000530 ORTHO05D003341 9.0e-06 53.9 46 63.0
Manes.10G017900 Manihot esculenta HOM05D000530 ORTHO05D003341 9.0e-06 53.9 44 61.4
PSO384G0772 Papaver somniferum HOM05D000530 ORTHO05D003341 9.0e-06 53.9 43 55.8
Peaxi162Scf00957g00321 Petunia axillaris HOM05D000530 ORTHO05D003341 9.0e-06 53.9 43 62.8
Potri.010G192900 Populus trichocarpa HOM05D000530 ORTHO05D003341 9.0e-06 53.9 44 61.4
QL08p062617 Quercus lobata HOM05D000530 ORTHO05D003341 9.0e-06 53.9 46 60.9
SGA_v2.0_scaffold221G42711 Striga asiatica HOM05D000530 ORTHO05D003341 9.0e-06 53.9 43 62.8
TPR.G8039 Trifolium pratense HOM05D000530 ORTHO05D003341 9.0e-06 53.9 43 58.1
GSVIVG01016368001 Vitis vinifera HOM05D000530 ORTHO05D003341 9.0e-06 53.9 43 65.1


User provided reference genes

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