Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.6e-236 822.4 414 100.0
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 1.0e-235 819.7 414 99.8
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 1.0e-235 819.7 414 99.8
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 7.8e-228 793.5 414 96.4
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 2.3e-227 792.0 414 96.1
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 5.8e-223 777.3 414 93.7
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 7.3e-218 760.4 412 91.3
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 6.8e-216 753.8 414 90.1
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.2e-215 753.1 412 90.3
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.5e-215 752.7 412 90.8
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 3.2e-213 745.0 412 89.3
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.4e-207 724.9 413 87.4
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 2.7e-204 715.3 414 84.1
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 7.9e-204 713.8 414 83.6
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 6.9e-200 700.7 413 83.3
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 9.9e-199 696.8 414 82.9
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 6.0e-196 687.6 413 81.4
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.4e-192 676.4 412 80.1
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 3.8e-190 668.3 411 78.6
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.2e-183 646.7 411 77.4
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.7e-182 642.9 412 75.7
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 2.9e-182 642.1 411 76.6
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.1e-181 640.2 411 77.6
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 9.3e-181 637.1 412 76.2
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 2.7e-180 635.6 411 75.2
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 2.7e-180 635.6 411 75.4
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.0e-179 633.6 413 74.3
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.3e-179 633.3 411 75.4
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.3e-179 633.3 414 74.6
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 2.3e-179 632.5 411 74.2
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 3.0e-179 632.1 413 74.3
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.0e-179 632.1 411 74.9
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.0e-179 632.1 410 75.4
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 5.1e-179 631.3 409 75.3
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.1e-179 631.3 411 75.2
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 8.7e-179 630.6 410 73.9
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.5e-178 629.8 413 74.8
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.5e-178 629.8 409 75.1
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 3.3e-178 628.6 411 74.9
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 3.3e-178 628.6 413 73.4
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 4.3e-178 628.2 411 74.7
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 5.7e-178 627.9 411 74.7
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.2e-177 625.9 410 73.7
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.3e-177 624.4 410 73.4
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 6.3e-177 624.4 413 72.6
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 6.3e-177 624.4 412 72.8
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 8.2e-177 624.0 410 73.4
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 1.1e-176 623.6 411 73.5
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.1e-176 623.6 417 74.3
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 1.1e-176 623.6 410 72.7
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.8e-176 622.9 413 72.6
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.8e-176 622.9 412 74.0
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 1.8e-176 622.9 410 72.7
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 2.4e-176 622.5 410 72.2
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.4e-176 622.5 410 73.2
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.4e-176 622.5 410 73.4
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 3.1e-176 622.1 410 72.9
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 9.0e-176 620.5 412 73.3
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.0e-175 619.4 410 72.9
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.6e-175 619.0 413 72.2
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 3.4e-175 618.6 413 72.9
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 4.5e-175 618.2 416 73.6
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 4.5e-175 618.2 411 74.2
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 4.5e-175 618.2 413 72.9
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 7.7e-175 617.5 410 72.7
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 7.7e-175 617.5 412 72.1
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 1.3e-174 616.7 414 73.7
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.7e-174 616.3 410 71.5
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.7e-174 616.3 415 73.5
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.7e-174 616.3 416 72.1
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 2.2e-174 615.9 416 73.1
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.2e-174 615.9 414 73.4
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 2.9e-174 615.5 415 73.0
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 3.8e-174 615.1 411 72.3
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 3.8e-174 615.1 415 73.7
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 3.8e-174 615.1 411 73.0
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 5.0e-174 614.8 413 71.9
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 5.0e-174 614.8 412 72.8
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 6.5e-174 614.4 410 73.2
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 1.1e-173 613.6 415 73.5
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.1e-173 613.6 415 72.5
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 1.9e-173 612.8 415 73.5
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.2e-172 610.1 411 72.5
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 1.2e-172 610.1 412 71.1
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 2.1e-172 609.4 411 72.0
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 2.3e-171 605.9 410 71.2
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 6.7e-171 604.4 414 71.0
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 8.8e-171 604.0 412 71.1
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 2.0e-170 602.8 410 71.0
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 5.7e-170 601.3 415 71.6
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 9.7e-170 600.5 412 71.1
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.7e-169 599.7 415 71.8
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 3.7e-169 598.6 444 67.6
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.4e-168 596.7 416 69.7
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 1.8e-168 596.3 409 69.4
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 9.1e-168 594.0 409 69.7
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 2.2e-166 589.3 413 69.7
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 1.4e-165 586.6 418 68.2
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 3.2e-165 585.5 410 69.8
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 3.6e-164 582.0 414 68.4
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 4.7e-164 581.6 456 64.3
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.0e-162 576.2 413 67.8
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 4.4e-162 575.1 413 67.1
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.4e-160 569.3 477 61.4
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 5.3e-160 568.2 413 66.3
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.3e-160 568.2 410 67.8
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 7.0e-160 567.8 417 65.9
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 5.9e-159 564.7 419 67.8
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.0e-158 563.9 403 70.7
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.6e-156 556.6 376 71.3
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 3.6e-156 555.4 348 77.0
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 3.0e-155 552.4 506 57.5
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 4.0e-155 552.0 466 59.9
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 4.0e-155 552.0 411 65.2
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 4.5e-151 538.5 414 64.7
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 4.2e-149 531.9 433 61.7
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 2.1e-148 529.6 410 62.7
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 3.5e-143 512.3 411 59.4
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 8.5e-142 507.7 329 74.5
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 3.0e-139 499.2 410 58.3
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 2.5e-133 479.6 303 74.9
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.0e-131 472.6 334 69.2
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 2.6e-130 469.5 410 56.3
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 2.2e-129 466.5 417 60.2
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.0e-126 457.6 350 64.9
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 5.2e-123 445.3 418 56.9
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.5e-122 443.7 335 65.4
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 4.4e-122 442.2 418 56.2
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.4e-120 436.4 238 88.2
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.1e-101 374.4 240 74.2
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 8.7e-86 321.6 432 43.3
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.3e-85 319.7 179 85.5
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 4.5e-74 282.7 387 41.9
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.9e-72 277.3 235 62.1
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.9e-66 255.8 183 73.2
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 1.5e-61 241.1 329 42.2
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 6.1e-47 192.6 220 51.8
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 8.8e-46 188.7 115 78.3
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 2.2e-41 174.1 238 45.0
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 7.0e-35 152.5 125 60.8
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 8.0e-31 139.0 74 89.2
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 8.0e-31 139.0 74 89.2
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 5.2e-30 136.3 80 78.8
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 1.5e-29 134.8 74 86.5
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 9.8e-29 132.1 86 76.7
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 9.8e-29 132.1 86 76.7
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.1e-27 128.6 85 67.1
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 7.0e-27 125.9 86 75.6
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 2.1e-23 114.4 88 62.5
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.3e-22 110.9 66 78.8
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 2.3e-22 110.9 84 63.1
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 3.0e-22 110.5 83 57.8
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 7.0e-19 99.4 81 61.7
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.2e-18 98.6 66 74.2
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 1.0e-17 95.5 115 51.3
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 1.3e-17 95.1 115 50.4
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 2.9e-17 94.0 183 37.7
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 8.6e-17 92.4 73 57.5
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 2.9e-12 77.4 125 41.6
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 2.4e-11 74.3 59 57.6
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 1.3e-09 68.6 87 43.7
Cfa022542 Carpinus fangiana HOM05D004491 ORTHO05D122449 6.2e-07 59.7 338 25.7


User provided reference genes

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