Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10137 Brassica carinata HOM05D001239 ORTHO05D000925 5.8e-37 157.1 85 100.0
BolC3t19864H Brassica oleracea HOM05D001239 ORTHO05D000925 1.6e-23 112.5 85 64.7
BraA10t42534Z Brassica rapa HOM05D001239 ORTHO05D000925 1.1e-19 99.8 81 61.7
BolC6t39320H Brassica oleracea HOM05D001239 ORTHO05D000925 4.2e-19 97.8 82 54.9
BolC1t05776H Brassica oleracea HOM05D001239 ORTHO05D000925 1.6e-18 95.9 85 55.3
BraA01t03685Z Brassica rapa HOM05D001239 ORTHO05D000925 2.5e-16 88.6 79 54.4
BolC1t02319H Brassica oleracea HOM05D000003 ORTHO05D000004 9.7e-16 86.7 79 55.7
BolC8t51300H Brassica oleracea HOM05D001239 ORTHO05D000925 9.7e-16 86.7 79 54.4
BraA05t23088Z Brassica rapa HOM05D001239 ORTHO05D000925 4.8e-15 84.3 71 60.6
BraA09t42252Z Brassica rapa HOM05D001239 ORTHO05D000925 4.8e-15 84.3 81 54.3
BraA08t33225Z Brassica rapa HOM05D001239 ORTHO05D000925 1.8e-14 82.4 73 52.1
BraA03t12191Z Brassica rapa HOM05D001239 ORTHO05D000925 5.3e-14 80.9 78 56.4
BraA09t36287Z Brassica rapa HOM05D001239 ORTHO05D000925 2.0e-13 79.0 78 55.1
BolC4t27615H Brassica oleracea HOM05D001239 ORTHO05D000925 3.4e-13 78.2 80 50.0
BcaB04g19606 Brassica carinata HOM05D001239 ORTHO05D000925 5.9e-13 77.4 69 55.1
BolC4t21932H Brassica oleracea HOM05D001239 ORTHO05D000925 5.9e-13 77.4 72 55.6
C03p13660 Brassica napus HOM05D001239 ORTHO05D000925 7.7e-13 77.0 81 45.7
BraA02t06515Z Brassica rapa HOM05D001239 ORTHO05D000925 1.3e-12 76.3 73 50.7
BolC5t29135H Brassica oleracea HOM05D001239 ORTHO05D000925 1.7e-12 75.9 80 51.2
C03p29680 Brassica napus HOM05D001239 ORTHO05D000925 2.2e-12 75.5 77 48.1
BolC4t22146H Brassica oleracea HOM05D001239 ORTHO05D000925 2.2e-12 75.5 69 53.6
BraA08t34149Z Brassica rapa HOM05D001239 ORTHO05D000925 6.5e-12 73.9 80 47.5
BcaNung01302 Brassica carinata HOM05D001239 ORTHO05D000925 1.4e-11 72.8 59 55.9
BolC4t21938H Brassica oleracea HOM05D001239 ORTHO05D000925 3.2e-11 71.6 71 52.1
BolC3t15317H Brassica oleracea HOM05D001239 ORTHO05D000925 4.2e-11 71.2 77 45.5
BolC7t40707H Brassica oleracea HOM05D001239 ORTHO05D000925 4.2e-11 71.2 58 55.2
BcaC05g30114 Brassica carinata HOM05D001239 ORTHO05D000925 5.5e-11 70.9 56 58.9
BolC8t52842H Brassica oleracea HOM05D000003 ORTHO05D000925 5.5e-11 70.9 69 53.6
BraA04t18603Z Brassica rapa HOM05D001239 ORTHO05D000925 7.2e-11 70.5 78 48.7
BolC3t15491H Brassica oleracea HOM05D001239 ORTHO05D000925 9.4e-11 70.1 80 47.5
BolC3t21245H Brassica oleracea HOM05D001239 ORTHO05D000925 9.4e-11 70.1 71 52.1
BraA02t06467Z Brassica rapa HOM05D001239 ORTHO05D000925 9.4e-11 70.1 81 48.1
A03p59740 Brassica napus HOM05D001239 ORTHO05D000925 1.6e-10 69.3 78 51.3
BolC9t54914H Brassica oleracea HOM05D001239 ORTHO05D000925 1.6e-10 69.3 56 60.7
BcaB04g18676 Brassica carinata HOM05D001239 ORTHO05D000925 2.7e-10 68.6 60 53.3
BcaC07g40448 Brassica carinata HOM05D001239 ORTHO05D000925 3.6e-10 68.2 72 56.9
BolC3t21199H Brassica oleracea HOM05D001239 ORTHO05D000925 3.6e-10 68.2 80 50.0
BraA09t41396Z Brassica rapa HOM05D001239 ORTHO05D000925 4.6e-10 67.8 73 47.9
A09p48850 Brassica napus HOM05D001239 ORTHO05D000925 6.1e-10 67.4 73 47.9
BolC9t57618H Brassica oleracea HOM05D001239 ORTHO05D000925 6.1e-10 67.4 73 50.7
AL8G23160 Arabidopsis lyrata HOM05D001239 ORTHO05D000925 1.0e-09 66.6 58 56.9
BcaC04g21187 Brassica carinata HOM05D005242 ORTHO05D000925 1.0e-09 66.6 66 53.0
BcaC06g32341 Brassica carinata HOM05D001239 ORTHO05D000925 2.3e-09 65.5 80 45.0
BolC3t19592H Brassica oleracea HOM05D001239 ORTHO05D000925 2.3e-09 65.5 80 47.5
BolC6t35388H Brassica oleracea HOM05D001239 ORTHO05D000925 2.3e-09 65.5 73 45.2
BolC1t00784H Brassica oleracea HOM05D001239 ORTHO05D000925 3.9e-09 64.7 69 44.9
BraA08t33512Z Brassica rapa HOM05D001239 ORTHO05D000925 3.9e-09 64.7 68 48.5
BolC4t27457H Brassica oleracea HOM05D005207 ORTHO05D010629 5.1e-09 64.3 65 52.3
BolC1t04689H Brassica oleracea HOM05D001239 ORTHO05D000925 6.7e-09 63.9 78 46.2
BolC1t05481H Brassica oleracea HOM05D001239 ORTHO05D000925 6.7e-09 63.9 70 48.6
CARHR055780 Cardamine hirsuta HOM05D001239 ORTHO05D000925 8.8e-09 63.5 63 50.8
CARHR153540 Cardamine hirsuta HOM05D001239 ORTHO05D000925 1.1e-08 63.2 68 48.5
BcaC01g03824 Brassica carinata HOM05D001239 ORTHO05D000925 1.5e-08 62.8 67 50.7
BolC2t06873H Brassica oleracea HOM05D001239 ORTHO05D000925 1.9e-08 62.4 72 47.2
BolC8t51239H Brassica oleracea HOM05D001239 ORTHO05D000925 1.9e-08 62.4 70 44.3
BraA03t13628Z Brassica rapa HOM05D001239 ORTHO05D000925 1.9e-08 62.4 67 55.2
CARHR056400 Cardamine hirsuta HOM05D001239 ORTHO05D000925 2.5e-08 62.0 63 52.4
BcaB04g18102 Brassica carinata HOM05D001239 ORTHO05D000925 4.3e-08 61.2 65 49.2
A04p30600 Brassica napus HOM05D001239 ORTHO05D000925 4.3e-08 61.2 71 46.5
BraA08t32778Z Brassica rapa HOM05D001239 ORTHO05D000925 7.4e-08 60.5 66 48.5
BraA10t43772Z Brassica rapa HOM05D001239 ORTHO05D000925 7.4e-08 60.5 66 47.0
BcaC01g01483 Brassica carinata HOM05D001239 ORTHO05D000925 9.7e-08 60.1 66 47.0
BcaC04g20670 Brassica carinata HOM05D001239 ORTHO05D000925 1.7e-07 59.3 67 46.3
BolC4t25534H Brassica oleracea HOM05D008756 ORTHO05D028237 1.7e-07 59.3 51 58.8
Thhalv10023819m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 1.7e-07 59.3 66 48.5
AT4G09490 Arabidopsis thaliana HOM05D001239 ORTHO05D000925 2.2e-07 58.9 68 42.6
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 2.2e-07 58.9 54 57.4
BolC4t25510H Brassica oleracea HOM05D008756 ORTHO05D028237 2.2e-07 58.9 51 56.9
C01p27290 Brassica napus HOM05D001239 ORTHO05D000925 2.8e-07 58.5 70 44.3
BcaC08g47031 Brassica carinata HOM05D001239 ORTHO05D000925 3.7e-07 58.2 75 40.0
C06p07680 Brassica napus HOM05D001239 ORTHO05D000925 3.7e-07 58.2 66 47.0
BraA04t17503Z Brassica rapa HOM05D001239 ORTHO05D000925 3.7e-07 58.2 66 43.9
Thhalv10003494m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 3.7e-07 58.2 59 49.2
BcaC01g06339 Brassica carinata HOM05D001239 ORTHO05D000925 4.8e-07 57.8 51 52.9
BolC3t14085H Brassica oleracea HOM05D001239 ORTHO05D000925 4.8e-07 57.8 51 52.9
BcaB05g24950 Brassica carinata HOM05D000003 ORTHO05D000004 6.3e-07 57.4 59 54.2
BolC5t30354H Brassica oleracea HOM05D001239 ORTHO05D000925 6.3e-07 57.4 51 54.9
BolC9t56169H Brassica oleracea HOM05D001239 ORTHO05D000925 6.3e-07 57.4 66 50.0
BcaB01g05133 Brassica carinata HOM05D000003 ORTHO05D000925 8.2e-07 57.0 66 45.5
BcaNung03545 Brassica carinata HOM05D001239 ORTHO05D000925 8.2e-07 57.0 62 46.8
C03p39150 Brassica napus HOM05D001239 ORTHO05D000925 8.2e-07 57.0 66 50.0
BcaB06g29335 Brassica carinata HOM05D001239 ORTHO05D000925 1.4e-06 56.2 76 43.4
BcaC05g29510 Brassica carinata HOM05D001239 ORTHO05D000925 1.4e-06 56.2 68 45.6
BcaC07g39054 Brassica carinata HOM05D001239 ORTHO05D000925 1.4e-06 56.2 71 46.5
BcaC08g43399 Brassica carinata HOM05D001239 ORTHO05D000925 1.4e-06 56.2 66 45.5
BcaC08g46180 Brassica carinata HOM05D001239 ORTHO05D008139 1.4e-06 56.2 62 46.8
BraA08t32647Z Brassica rapa HOM05D001239 ORTHO05D000925 1.4e-06 56.2 64 46.9
BolC2t07161H Brassica oleracea HOM05D010911 ORTHO05D041405 1.8e-06 55.8 68 45.6
BolC4t26620H Brassica oleracea HOM05D001239 ORTHO05D000925 1.8e-06 55.8 66 50.0
C02p10910 Brassica napus HOM05D010911 ORTHO05D041405 2.4e-06 55.5 68 45.6
C06p08080 Brassica napus HOM05D001239 ORTHO05D000925 2.4e-06 55.5 66 43.9
BolC6t35891H Brassica oleracea HOM05D010911 ORTHO05D000925 2.4e-06 55.5 66 43.9
BolC6t37992H Brassica oleracea HOM05D010756 ORTHO05D000925 2.4e-06 55.5 79 44.3
CARHR160220 Cardamine hirsuta HOM05D001239 ORTHO05D000925 2.4e-06 55.5 68 42.6
BcaC07g41305 Brassica carinata HOM05D043732 ORTHO05D000925 3.1e-06 55.1 70 41.4
C05p07060 Brassica napus HOM05D038184 ORTHO05D040316 3.1e-06 55.1 68 47.1
C08p43120 Brassica napus HOM05D043732 ORTHO05D000925 3.1e-06 55.1 70 41.4
BolC1t03157H Brassica oleracea HOM05D010756 ORTHO05D000925 3.1e-06 55.1 77 37.7
BolC5t29461H Brassica oleracea HOM05D038184 ORTHO05D040316 3.1e-06 55.1 68 47.1
AL9U10020 Arabidopsis lyrata HOM05D001239 ORTHO05D000925 4.1e-06 54.7 67 38.8
BcaC05g25020 Brassica carinata HOM05D020595 ORTHO05D000925 4.1e-06 54.7 57 49.1
BcaC01g05560 Brassica carinata HOM05D001239 ORTHO05D000925 5.3e-06 54.3 72 41.7
BcaC08g46106 Brassica carinata HOM05D001239 ORTHO05D000925 5.3e-06 54.3 67 47.8
BcaNung00296 Brassica carinata HOM05D001239 ORTHO05D000925 5.3e-06 54.3 70 42.9
Thhalv10011157m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 5.3e-06 54.3 57 45.6
BcaB06g26236 Brassica carinata HOM05D010911 ORTHO05D013233 6.9e-06 53.9 65 40.0
BcaC03g15774 Brassica carinata HOM05D001239 ORTHO05D000925 6.9e-06 53.9 72 43.1
BcaC04g22514 Brassica carinata HOM05D001239 ORTHO05D027739 6.9e-06 53.9 67 43.3
C07p34530 Brassica napus HOM05D009883 ORTHO05D042457 6.9e-06 53.9 61 47.5
BolC7t43984H Brassica oleracea HOM05D009883 ORTHO05D042457 6.9e-06 53.9 61 47.5
BraA01t00620Z Brassica rapa HOM05D001239 ORTHO05D000925 6.9e-06 53.9 47 59.6
BcaB08g34767 Brassica carinata HOM05D001239 ORTHO05D008139 9.1e-06 53.5 74 37.8
BcaC02g11002 Brassica carinata HOM05D001239 ORTHO05D008139 9.1e-06 53.5 62 46.8


User provided reference genes

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