Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09975 Brassica carinata HOM05D010123 ORTHO05D012290 6.9e-142 507.3 256 100.0
BcaC02g09978 Brassica carinata HOM05D010123 ORTHO05D012290 6.9e-142 507.3 256 100.0
C04p34410 Brassica napus HOM05D010123 ORTHO05D012290 6.9e-142 507.3 256 100.0
BolC4t25003H Brassica oleracea HOM05D010123 ORTHO05D012290 6.9e-142 507.3 256 100.0
BraA04t16006Z Brassica rapa HOM05D010123 ORTHO05D012290 9.4e-115 417.2 257 84.4
A04p02820 Brassica napus HOM05D010123 ORTHO05D012290 6.1e-98 361.3 257 75.1
BcaB02g08286 Brassica carinata HOM05D010123 ORTHO05D012290 2.0e-96 356.3 263 73.4
A07p23750 Brassica napus HOM05D010123 ORTHO05D012290 1.4e-54 217.2 218 54.1
C06p24980 Brassica napus HOM05D010123 ORTHO05D012290 3.3e-51 206.1 206 56.3
BolC6t37650H Brassica oleracea HOM05D010123 ORTHO05D012290 3.3e-51 206.1 206 56.3
BcaC08g44881 Brassica carinata HOM05D010123 ORTHO05D012290 6.4e-47 191.8 206 51.5
BcaB02g07564 Brassica carinata HOM05D010123 ORTHO05D012290 3.2e-46 189.5 216 50.5
AL5G39610 Arabidopsis lyrata HOM05D010123 ORTHO05D012290 1.9e-38 163.7 241 39.4
Carub.0005s2480 Capsella rubella HOM05D010123 ORTHO05D012290 1.2e-37 161.0 227 40.5
BcaC08g44882 Brassica carinata HOM05D010123 ORTHO05D012290 4.6e-37 159.1 206 47.6
BcaC02g09977 Brassica carinata HOM05D010123 ORTHO05D012290 1.1e-33 147.9 67 100.0
Sp5g04760 Schrenkiella parvula HOM05D010123 ORTHO05D012290 7.6e-32 141.7 291 38.5
AT3G57960 Arabidopsis thaliana HOM05D010123 ORTHO05D012290 1.4e-30 137.5 229 37.1
Thhalv10006494m.g Eutrema salsugineum HOM05D010123 ORTHO05D012290 1.8e-25 120.6 152 44.7
Aa31LG10G12670 Aethionema arabicum HOM05D010123 ORTHO05D012290 4.5e-24 115.9 224 33.9
Aa31LG10G12660 Aethionema arabicum HOM05D010123 ORTHO05D012290 1.9e-22 110.5 221 33.5
Sp5g04750 Schrenkiella parvula HOM05D011318 ORTHO05D013413 6.0e-21 105.5 267 31.5
BraA07t30028Z Brassica rapa HOM05D010123 ORTHO05D012290 1.8e-20 104.0 100 58.0
Carub.0005s2481 Capsella rubella HOM05D011318 ORTHO05D013413 5.7e-19 99.0 292 30.1
Thhalv10006402m.g Eutrema salsugineum HOM05D011318 ORTHO05D013413 6.9e-17 92.0 251 31.5
AT3G57970 Arabidopsis thaliana HOM05D011318 ORTHO05D013413 7.7e-16 88.6 276 29.0
C08p33540 Brassica napus HOM05D011318 ORTHO05D013413 6.5e-15 85.5 296 28.0
THA.LOC104824469 Tarenaya hassleriana HOM05D011318 ORTHO05D013413 6.1e-13 79.0 236 26.3
BolC8t50949H Brassica oleracea HOM05D011318 ORTHO05D013413 1.8e-12 77.4 302 28.1
AL5G39620 Arabidopsis lyrata HOM05D011318 ORTHO05D013413 3.9e-12 76.3 267 27.0
Aa31LG10G12680 Aethionema arabicum HOM05D011318 ORTHO05D013413 5.1e-12 75.9 227 25.1
BraA09t40526Z Brassica rapa HOM05D011318 ORTHO05D013413 9.7e-11 71.6 301 25.6
A09p50790 Brassica napus HOM05D011318 ORTHO05D013413 1.7e-10 70.9 301 25.9
C06p23620 Brassica napus HOM05D008477 ORTHO05D021917 3.7e-10 69.7 124 43.5
BolC6t37534H Brassica oleracea HOM05D008477 ORTHO05D021917 1.1e-09 68.2 122 43.4
BcaC08g44792 Brassica carinata HOM05D008477 ORTHO05D021917 2.4e-09 67.0 119 41.2
A07p22990 Brassica napus HOM05D008477 ORTHO05D021917 6.9e-09 65.5 121 41.3
A09p49470 Brassica napus HOM05D008477 ORTHO05D024345 1.2e-08 64.7 121 38.0
BraA07t29962Z Brassica rapa HOM05D008477 ORTHO05D021917 1.2e-08 64.7 181 32.6
BraA09t40400Z Brassica rapa HOM05D008477 ORTHO05D024345 1.2e-08 64.7 121 38.0
C08p31850 Brassica napus HOM05D008477 ORTHO05D024345 1.5e-08 64.3 194 31.4
THA.LOC104804890 Tarenaya hassleriana HOM05D011318 ORTHO05D013413 1.5e-08 64.3 282 23.4
Aa31LG3G6320 Aethionema arabicum HOM05D001227 ORTHO05D001082 3.4e-08 63.2 82 39.0
Migut.K00042 Erythranthe guttata HOM05D001227 ORTHO05D001082 3.4e-08 63.2 86 40.7
AL3G23790 Arabidopsis lyrata HOM05D001227 ORTHO05D001082 4.5e-08 62.8 211 23.2
Thhalv10020983m.g Eutrema salsugineum HOM05D001227 ORTHO05D001082 4.5e-08 62.8 86 34.9
Carub.0003s1149 Capsella rubella HOM05D001227 ORTHO05D001082 5.9e-08 62.4 211 23.2
BcaC01g04063 Brassica carinata HOM05D001227 ORTHO05D001082 7.7e-08 62.0 86 34.9
BcaC08g44793 Brassica carinata HOM05D008477 ORTHO05D021917 7.7e-08 62.0 63 55.6
BolC3t16816H Brassica oleracea HOM05D006205 ORTHO05D007703 7.7e-08 62.0 86 34.9
SalBow1G0584 Salvia bowleyana HOM05D001227 ORTHO05D001082 1.0e-07 61.6 70 44.3
SalBow1G1478 Salvia bowleyana HOM05D001227 ORTHO05D001082 1.0e-07 61.6 70 44.3
Sp3g10370 Schrenkiella parvula HOM05D001227 ORTHO05D001082 1.3e-07 61.2 81 35.8
BcaC09g48216 Brassica carinata HOM05D001227 ORTHO05D001082 1.7e-07 60.8 81 35.8
BolC1t05262H Brassica oleracea HOM05D001227 ORTHO05D001082 1.7e-07 60.8 81 35.8
AL6G16890 Arabidopsis lyrata HOM05D001227 ORTHO05D001082 2.2e-07 60.5 81 35.8
BcaB04g18695 Brassica carinata HOM05D001227 ORTHO05D001082 2.2e-07 60.5 81 35.8
BcaB04g21094 Brassica carinata HOM05D001227 ORTHO05D001082 2.2e-07 60.5 81 35.8
BcaC06g32543 Brassica carinata HOM05D001227 ORTHO05D001082 2.2e-07 60.5 81 35.8
Prupe.7G075700 Prunus persica HOM05D001227 ORTHO05D001082 2.2e-07 60.5 82 36.6
SGA_v2.0_scaffold274G46475 Striga asiatica HOM05D001227 ORTHO05D001082 2.2e-07 60.5 73 39.7
MSTRG.26089 Avicennia marina HOM05D001227 ORTHO05D001082 2.9e-07 60.1 68 41.2
AT3G12140 Arabidopsis thaliana HOM05D001227 ORTHO05D001082 3.8e-07 59.7 210 22.9
AT5G06780 Arabidopsis thaliana HOM05D001227 ORTHO05D001082 3.8e-07 59.7 81 34.6
Carub.0006s0567 Capsella rubella HOM05D001227 ORTHO05D001082 3.8e-07 59.7 190 22.6
BcaC07g40139 Brassica carinata HOM05D008477 ORTHO05D012146 6.5e-07 58.9 119 36.1
Eucgr.B03648 Eucalyptus grandis HOM05D001227 ORTHO05D001082 6.5e-07 58.9 69 34.8
A10p29600 Brassica napus HOM05D001227 ORTHO05D001082 8.5e-07 58.5 68 41.2
BolC8t50804H Brassica oleracea HOM05D008477 ORTHO05D024345 8.5e-07 58.5 122 36.9
BraA10t45002Z Brassica rapa HOM05D001227 ORTHO05D001082 1.1e-06 58.2 68 39.7
SGA_v2.0_scaffold94G28427 Striga asiatica HOM05D001227 ORTHO05D001082 1.1e-06 58.2 64 42.2
CANSAT54G0326 Cannabis sativa HOM05D001227 ORTHO05D001082 1.9e-06 57.4 96 33.3
CiPaw.09G031200 Carya illinoinensis HOM05D001227 ORTHO05D001082 1.9e-06 57.4 71 40.8
Thhalv10014235m.g Eutrema salsugineum HOM05D001227 ORTHO05D001082 1.9e-06 57.4 69 34.8
Sp6g36070 Schrenkiella parvula HOM05D001227 ORTHO05D001082 2.5e-06 57.0 79 36.7
Peaxi162Scf00258g00315 Petunia axillaris HOM05D001227 ORTHO05D001082 3.2e-06 56.6 79 35.4
Ah.04g152410 Amaranthus hybridus HOM05D001227 ORTHO05D001082 4.2e-06 56.2 74 35.1
EL10Ac3g06929 Beta vulgaris HOM05D001227 ORTHO05D001082 4.2e-06 56.2 79 35.4
CARHR086710 Cardamine hirsuta HOM05D001227 ORTHO05D001082 4.2e-06 56.2 211 22.7
CARHR206400 Cardamine hirsuta HOM05D001227 ORTHO05D001082 4.2e-06 56.2 202 23.3
Cpa.g.sc85.77 Carica papaya HOM05D001227 ORTHO05D001082 4.2e-06 56.2 83 36.1
CDE10G1275 Ceratophyllum demersum HOM05D001227 ORTHO05D001082 4.2e-06 56.2 75 37.3
Nitab4.5_0000324g0250 Nicotiana tabacum HOM05D001227 ORTHO05D001082 4.2e-06 56.2 79 34.2
Nitab4.5_0003890g0040 Nicotiana tabacum HOM05D001227 ORTHO05D001082 4.2e-06 56.2 79 34.2
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 5.5e-06 55.8 229 22.7
THA.LOC104809928 Tarenaya hassleriana HOM05D001227 ORTHO05D001082 5.5e-06 55.8 68 36.8
BcaC06g32393 Brassica carinata HOM05D001227 ORTHO05D001082 7.2e-06 55.5 80 36.2
C09p69980 Brassica napus HOM05D001227 ORTHO05D001082 7.2e-06 55.5 80 36.2
CANSAT64G2717 Cannabis sativa HOM05D001227 ORTHO05D001082 7.2e-06 55.5 70 34.3
Medtr1g053905 Medicago truncatula HOM05D001227 ORTHO05D001082 7.2e-06 55.5 70 35.7
Sc13g0002240 Simmondsia chinensis HOM05D001227 ORTHO05D001082 7.2e-06 55.5 69 34.8
BcaC07g39968 Brassica carinata HOM05D008477 ORTHO05D024345 9.4e-06 55.1 110 37.3
Thecc.05G170100 Theobroma cacao HOM05D001227 ORTHO05D001082 9.4e-06 55.1 79 34.2


User provided reference genes

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