Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09946 Brassica carinata HOM05D028252 ORTHO05D016743 1.7e-60 235.7 111 100.0
BcaC02g09947 Brassica carinata HOM05D028252 ORTHO05D016743 1.7e-60 235.7 111 100.0
C04p34870 Brassica napus HOM05D028252 ORTHO05D016743 7.1e-59 230.3 110 97.3
BolC4t25039H Brassica oleracea HOM05D028252 ORTHO05D016743 7.1e-59 230.3 110 97.3
Sp5g05070 Schrenkiella parvula HOM05D000527 ORTHO05D000559 6.5e-12 74.3 42 81.0
Aa31LG10G12350 Aethionema arabicum HOM05D000527 ORTHO05D000559 1.4e-11 73.2 42 78.6
Thhalv10005800m.g Eutrema salsugineum HOM05D000527 ORTHO05D000559 2.5e-11 72.4 42 78.6
A09p50380 Brassica napus HOM05D000527 ORTHO05D000559 7.2e-11 70.9 42 78.6
BraA09t40490Z Brassica rapa HOM05D000527 ORTHO05D000559 7.2e-11 70.9 42 78.6
AT3G57520 Arabidopsis thaliana HOM05D000527 ORTHO05D000559 1.2e-10 70.1 42 76.2
AL5G39100 Arabidopsis lyrata HOM05D000527 ORTHO05D000559 1.6e-10 69.7 42 76.2
C08p33050 Brassica napus HOM05D000527 ORTHO05D000559 2.7e-10 68.9 42 76.2
Carub.0005s2436 Capsella rubella HOM05D000527 ORTHO05D000559 2.7e-10 68.9 42 73.8
CARHR167740 Cardamine hirsuta HOM05D000527 ORTHO05D000559 2.7e-10 68.9 42 73.8
BolC8t50905H Brassica oleracea HOM05D000527 ORTHO05D000559 7.9e-10 67.4 42 73.8
BcaC07g40373 Brassica carinata HOM05D000527 ORTHO05D000559 1.8e-09 66.2 43 76.7
VMungo0720G2802 Vigna mungo HOM05D000527 ORTHO05D000559 2.8e-07 58.9 42 61.9
THA.LOC104802186 Tarenaya hassleriana HOM05D000527 ORTHO05D000559 4.8e-07 58.2 42 59.5
TPR.G27780 Trifolium pratense HOM05D000527 ORTHO05D016743 6.3e-07 57.8 52 51.9
Nn2g15339 Nelumbo nucifera HOM05D000527 ORTHO05D000559 8.2e-07 57.4 40 62.5
CSS0026938 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 1.1e-06 57.0 40 60.0
Migut.J01768 Erythranthe guttata HOM05D000527 ORTHO05D000559 1.1e-06 57.0 40 60.0
Nitab4.5_0009705g0010 Nicotiana tabacum HOM05D000527 ORTHO05D000559 1.1e-06 57.0 40 62.5
Rhsim04G0100900 Rhododendron simsii HOM05D000527 ORTHO05D000559 1.1e-06 57.0 40 60.0
vmacro09084 Vaccinium macrocarpon HOM05D000527 ORTHO05D000559 1.1e-06 57.0 40 60.0
Actinidia17242 Actinidia chinensis HOM05D000527 ORTHO05D000559 1.4e-06 56.6 40 62.5
Cpa.g.sc92.35 Carica papaya HOM05D000527 ORTHO05D000559 1.4e-06 56.6 40 65.0
Ciclev10004372m.g Citrus clementina HOM05D000527 ORTHO05D000559 1.4e-06 56.6 40 62.5
DCAR_020480 Daucus carota HOM05D000527 ORTHO05D000559 1.4e-06 56.6 40 62.5
Dinv39589 Davidia involucrata HOM05D000527 ORTHO05D000559 1.4e-06 56.6 40 62.5
Prupe.7G064000 Prunus persica HOM05D000527 ORTHO05D000559 1.4e-06 56.6 40 60.0
unitig_8.g3508 Utricularia gibba HOM05D000527 ORTHO05D000559 1.4e-06 56.6 42 59.5
VMungo1383G0554 Vigna mungo HOM05D000527 ORTHO05D000559 1.4e-06 56.6 40 57.5
MSTRG.26118 Avicennia marina HOM05D000527 ORTHO05D000559 1.8e-06 56.2 40 60.0
Cfa016838 Carpinus fangiana HOM05D000527 ORTHO05D000559 1.8e-06 56.2 40 60.0
Haze_19881 Corylus avellana HOM05D000527 ORTHO05D000559 1.8e-06 56.2 40 60.0
Haze_19889 Corylus avellana HOM05D000527 ORTHO05D000559 1.8e-06 56.2 40 60.0
Hma1.2p1_0696F.1_g204720 Hydrangea macrophylla HOM05D000527 ORTHO05D000559 1.8e-06 56.2 40 60.0
MD14G1070200 Malus domestica HOM05D000527 ORTHO05D000559 1.8e-06 56.2 40 60.0
Oeu000817.1 Olea europaea HOM05D000527 ORTHO05D000559 1.8e-06 56.2 40 60.0
MSTRG.19870 Avicennia marina HOM05D000527 ORTHO05D000559 2.4e-06 55.8 40 60.0
CiPaw.10G032300 Carya illinoinensis HOM05D000527 ORTHO05D000559 2.4e-06 55.8 40 60.0
MELO3C023110.2 Cucumis melo HOM05D000527 ORTHO05D000559 2.4e-06 55.8 40 60.0
CsaV3_4G011820 Cucumis sativus L. HOM05D000527 ORTHO05D000559 2.4e-06 55.8 40 60.0
Glyma.03G137900 Glycine max HOM05D000527 ORTHO05D000559 2.4e-06 55.8 40 57.5
MD12G1077900 Malus domestica HOM05D000527 ORTHO05D016743 2.4e-06 55.8 40 57.5
PGR004G0504 Punica granatum HOM05D000527 ORTHO05D000559 2.4e-06 55.8 40 57.5
QL07p020877 Quercus lobata HOM05D000527 ORTHO05D000559 2.4e-06 55.8 40 60.0
Thecc.05G158600 Theobroma cacao HOM05D000527 ORTHO05D000559 2.4e-06 55.8 40 60.0
TWI53G0822 Tripterygium wilfordii HOM05D000527 ORTHO05D000559 2.4e-06 55.8 40 57.5
TWI74G0532 Tripterygium wilfordii HOM05D000527 ORTHO05D000559 2.4e-06 55.8 40 60.0
Aqoxy2G00191 Aquilegia oxysepala HOM05D000527 ORTHO05D000559 3.1e-06 55.5 42 54.8
ClCG04G003310 Citrullus lanatus HOM05D000527 ORTHO05D000559 3.1e-06 55.5 40 57.5
Migut.K00079 Erythranthe guttata HOM05D000527 ORTHO05D000559 3.1e-06 55.5 42 54.8
Eucgr.A02374 Eucalyptus grandis HOM05D000527 ORTHO05D000559 3.1e-06 55.5 40 57.5
Lsat_1_v5_gn_5_162541 Lactuca sativa HOM05D000527 ORTHO05D000559 3.1e-06 55.5 40 57.5
Manes.09G024300 Manihot esculenta HOM05D000527 ORTHO05D000559 3.1e-06 55.5 40 57.5
MSTRG.6436 Avicennia marina HOM05D000527 ORTHO05D000559 4.1e-06 55.1 42 54.8
Gorai.002G147800 Gossypium raimondii HOM05D000527 ORTHO05D000559 4.1e-06 55.1 40 60.0
Psat6g083720 Pisum sativum HOM05D000527 ORTHO05D000559 4.1e-06 55.1 40 55.0
Sed0013764 Sechium edule HOM05D000527 ORTHO05D000559 4.1e-06 55.1 40 57.5
Sed0026045 Sechium edule HOM05D000527 ORTHO05D000559 4.1e-06 55.1 40 57.5
CSS0043340 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 5.3e-06 54.7 40 57.5
CiPaw.09G036600 Carya illinoinensis HOM05D000527 ORTHO05D000559 5.3e-06 54.7 40 57.5
AUR62024430 Chenopodium quinoa HOM05D000527 ORTHO05D000559 5.3e-06 54.7 40 60.0
COL.COLO4_28216 Corchorus olitorius HOM05D000527 ORTHO05D000559 5.3e-06 54.7 40 60.0
Duzib093G2223 Durio zibethinus HOM05D000527 ORTHO05D000559 5.3e-06 54.7 38 60.5
Lju124C37T7 Lonicera japonica HOM05D000527 ORTHO05D000559 5.3e-06 54.7 40 57.5
MBI01_g26746_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 5.3e-06 54.7 40 57.5
Oeu064309.1 Olea europaea HOM05D000527 ORTHO05D000559 5.3e-06 54.7 40 60.0
RcHm_v2.0_Chr3g0481621 Rosa chinensis HOM05D000527 ORTHO05D000559 5.3e-06 54.7 40 57.5
SalBow6G4225 Salvia bowleyana HOM05D000527 ORTHO05D000559 5.3e-06 54.7 40 57.5
Actinidia38554 Actinidia chinensis HOM05D000527 ORTHO05D000559 6.9e-06 54.3 38 60.5
DCAR_013594 Daucus carota HOM05D000527 ORTHO05D000559 6.9e-06 54.3 40 55.0
HanXRQChr13g0390751 Helianthus annuus HOM05D000527 ORTHO05D000559 6.9e-06 54.3 40 55.0
Lalb_Chr01g0017461 Lupinus albus HOM05D000527 ORTHO05D000559 6.9e-06 54.3 40 55.0
Medtr7g091880 Medicago truncatula HOM05D000527 ORTHO05D000559 6.9e-06 54.3 40 55.0
THA.LOC104824451 Tarenaya hassleriana HOM05D000527 ORTHO05D000559 6.9e-06 54.3 43 58.1
Gohir.D01G121100 Gossypium hirsutum HOM05D000527 ORTHO05D000559 9.1e-06 53.9 40 57.5
Nitab4.5_0002649g0010 Nicotiana tabacum HOM05D000527 ORTHO05D000559 9.1e-06 53.9 40 60.0
PSO541G4785 Papaver somniferum HOM05D000527 ORTHO05D000559 9.1e-06 53.9 40 57.5


User provided reference genes

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