Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 2.0e-80 302.4 151 100.0
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 2.8e-74 282.0 141 99.3
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 2.8e-74 282.0 150 95.3
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 1.8e-73 279.3 139 100.0
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 2.0e-64 249.2 152 85.5
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 3.0e-60 235.3 149 83.9
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 2.8e-58 228.8 150 81.3
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 5.8e-56 221.1 152 78.9
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.3e-52 209.9 153 75.2
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 4.3e-51 204.9 149 75.2
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 7.4e-51 204.1 152 74.3
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 7.4e-51 204.1 152 74.3
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 9.6e-51 203.8 147 75.5
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 1.3e-50 203.4 152 73.7
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 2.0e-48 196.1 150 72.7
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 2.0e-48 196.1 150 72.7
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 1.0e-47 193.7 150 72.0
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 1.0e-47 193.7 150 72.0
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 7.9e-45 184.1 144 70.8
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 3.0e-44 182.2 158 67.1
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 3.0e-44 182.2 155 67.7
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.6e-42 176.4 153 65.4
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 3.4e-40 168.7 161 63.4
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 4.6e-37 158.3 128 69.5
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 7.4e-27 124.4 126 59.5
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.4e-25 120.2 147 53.7
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 1.7e-23 113.2 160 50.6
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 5.0e-23 111.7 126 55.6
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 8.5e-23 110.9 157 50.3
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 8.5e-23 110.9 164 49.4
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 1.9e-22 109.8 152 49.3
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 1.9e-22 109.8 152 49.3
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 4.2e-22 108.6 162 51.2
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 9.4e-22 107.5 158 47.5
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 1.2e-21 107.1 149 49.0
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 1.2e-21 107.1 163 49.1
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 1.6e-21 106.7 152 48.7
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 1.6e-21 106.7 113 54.0
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 1.6e-21 106.7 113 54.0
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.7e-21 105.9 143 49.0
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 3.6e-21 105.5 158 50.6
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 4.7e-21 105.1 68 83.8
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 7.9e-21 104.4 80 72.5
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 1.0e-20 104.0 127 55.1
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.7e-20 101.3 146 47.3
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 8.2e-18 94.4 147 46.9
Carub.0004s2349 Capsella rubella HOM05D002974 ORTHO05D002992 6.5e-15 84.7 113 50.4
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.8e-10 68.6 122 41.8
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 6.3e-10 68.2 111 42.3
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 9.1e-09 64.3 123 39.0
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 2.7e-08 62.8 136 34.6
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.0e-07 60.8 55 58.2
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.0e-07 60.8 72 51.4
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.3e-07 60.5 65 55.4
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.3e-07 60.5 60 55.0
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.9e-07 59.3 43 69.8
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 2.9e-07 59.3 60 55.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 3.8e-07 58.9 54 57.4
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 3.8e-07 58.9 116 37.9
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 5.0e-07 58.5 155 36.8
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 5.0e-07 58.5 125 39.2
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 6.5e-07 58.2 33 87.9
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 6.5e-07 58.2 93 43.0
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.5e-07 58.2 62 58.1
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 6.5e-07 58.2 62 58.1
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.5e-07 57.8 40 70.0
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 8.5e-07 57.8 43 67.4
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 8.5e-07 57.8 74 51.4
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 8.5e-07 57.8 64 51.6
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.5e-07 57.8 127 36.2
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.1e-06 57.4 78 46.2
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.1e-06 57.4 52 59.6
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.5e-06 57.0 58 56.9
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.5e-06 57.0 74 54.1
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.5e-06 57.0 42 66.7
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 1.5e-06 57.0 52 61.5
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 1.5e-06 57.0 117 38.5
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 1.5e-06 57.0 119 38.7
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.9e-06 56.6 190 30.5
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.9e-06 56.6 62 54.8
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.9e-06 56.6 63 49.2
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.9e-06 56.6 63 49.2
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.9e-06 56.6 64 51.6
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 2.5e-06 56.2 138 37.0
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 2.5e-06 56.2 53 60.4
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 2.5e-06 56.2 87 50.6
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.5e-06 56.2 66 53.0
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 3.2e-06 55.8 118 38.1
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 4.2e-06 55.5 43 65.1
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 5.5e-06 55.1 135 35.6
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.5e-06 55.1 45 60.0
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 5.5e-06 55.1 147 33.3
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 5.5e-06 55.1 51 58.8
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.2e-06 54.7 45 60.0
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.2e-06 54.7 45 60.0
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 7.2e-06 54.7 55 56.4
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 9.4e-06 54.3 84 46.4
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 9.4e-06 54.3 55 56.4
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 9.4e-06 54.3 116 33.6


User provided reference genes

Program Settings