Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 1.9e-41 172.2 90 100.0
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 1.9e-41 172.2 90 100.0
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 7.3e-22 107.1 63 90.5
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 2.1e-21 105.5 59 93.2
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 3.6e-21 104.8 68 83.8
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 6.2e-21 104.0 68 83.8
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 6.2e-21 104.0 68 83.8
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 6.2e-21 104.0 68 83.8
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 1.1e-20 103.2 61 90.2
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 1.4e-20 102.8 59 91.5
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 1.1e-17 93.2 59 83.1
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.1e-17 93.2 59 83.1
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 2.4e-17 92.0 68 73.5
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 5.4e-17 90.9 68 72.1
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 1.6e-16 89.4 59 81.4
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 1.6e-16 89.4 59 81.4
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 3.0e-15 85.1 59 79.7
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 2.5e-14 82.0 58 79.3
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 3.3e-14 81.6 55 81.8
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 3.3e-14 81.6 55 81.8
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 3.3e-14 81.6 55 81.8
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 5.6e-14 80.9 67 65.7
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 7.3e-14 80.5 58 77.6
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 7.3e-14 80.5 58 77.6
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 8.1e-13 77.0 42 92.9
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 1.4e-12 76.3 51 78.4
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 2.0e-11 72.4 54 72.2
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 2.0e-11 72.4 54 72.2
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 2.6e-11 72.0 52 73.1
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 2.6e-11 72.0 50 78.0
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.6e-11 72.0 63 61.9
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 7.6e-11 70.5 56 64.3
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 9.9e-11 70.1 57 66.7
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 1.3e-10 69.7 62 62.9
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 2.2e-10 68.9 41 82.9
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 2.2e-10 68.9 53 67.9
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 2.2e-10 68.9 53 67.9
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 2.2e-10 68.9 53 67.9
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.8e-10 68.2 55 63.6
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 4.9e-10 67.8 38 86.8
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 4.9e-10 67.8 37 89.2
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 4.9e-10 67.8 37 89.2
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 1.1e-09 66.6 42 78.6
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 1.4e-09 66.2 39 82.1
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.4e-09 66.2 49 71.4
Carub.0004s2349 Capsella rubella HOM05D002974 ORTHO05D002992 2.4e-09 65.5 52 67.3
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 7.1e-09 63.9 36 86.1
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 6.6e-07 57.4 52 63.5
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 6.6e-07 57.4 52 63.5
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 8.7e-07 57.0 46 65.2
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 8.7e-07 57.0 35 82.9
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 8.7e-07 57.0 56 58.9
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.5e-06 56.2 65 55.4
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.9e-06 55.8 65 55.4
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 1.9e-06 55.8 52 61.5
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.5e-06 55.5 43 67.4
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 2.5e-06 55.5 41 70.7
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.5e-06 55.5 44 63.6
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 2.5e-06 55.5 52 59.6
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.3e-06 55.1 43 67.4
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.3e-06 55.1 53 58.5
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 3.3e-06 55.1 47 57.4
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 3.3e-06 55.1 62 48.4
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 4.3e-06 54.7 58 56.9
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 4.3e-06 54.7 65 55.4
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 4.3e-06 54.7 33 84.8
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.3e-06 54.7 46 58.7
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.6e-06 54.3 44 70.5
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 5.6e-06 54.3 86 44.2
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.6e-06 54.3 46 58.7
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.6e-06 54.3 46 58.7
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 7.3e-06 53.9 47 66.0
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 7.3e-06 53.9 49 61.2
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 9.6e-06 53.5 64 54.7
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 9.6e-06 53.5 58 53.4


User provided reference genes

Program Settings