Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 4.6e-118 427.9 220 100.0
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 4.6e-118 427.9 220 100.0
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 4.6e-118 427.9 220 100.0
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 2.3e-117 425.6 220 99.5
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 6.2e-115 417.5 220 96.4
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 2.3e-114 415.6 220 97.3
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 9.9e-113 410.2 220 95.9
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 2.4e-111 405.6 220 94.1
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.2e-110 403.3 220 93.6
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.6e-110 402.9 220 93.6
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 2.1e-110 402.5 220 92.3
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 2.7e-110 402.1 220 94.1
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 2.7e-110 402.1 220 94.1
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 3.5e-110 401.7 220 93.6
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 4.6e-110 401.4 220 92.7
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 6.6e-109 397.5 220 92.7
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 8.6e-109 397.1 220 92.3
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 1.1e-108 396.7 220 93.6
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 2.5e-108 395.6 220 91.8
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 8.7e-101 370.5 221 85.1
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.5e-100 369.8 220 85.0
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 3.3e-100 368.6 221 85.1
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 7.3e-100 367.5 218 83.9
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 9.6e-100 367.1 220 84.5
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 9.6e-100 367.1 221 85.1
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.6e-99 366.3 220 84.5
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 2.1e-99 365.9 220 84.1
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 4.8e-99 364.8 220 83.6
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 6.2e-99 364.4 221 83.3
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 6.2e-99 364.4 221 84.2
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 8.1e-99 364.0 221 84.6
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.1e-98 363.6 221 84.2
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 1.1e-98 363.6 221 83.7
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.1e-98 363.6 221 84.2
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 1.4e-98 363.2 221 84.2
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.4e-98 363.2 220 83.2
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 2.4e-98 362.5 220 83.2
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.0e-98 361.7 221 84.2
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 5.3e-98 361.3 221 83.7
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 5.3e-98 361.3 221 81.9
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 5.3e-98 361.3 220 84.1
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 6.9e-98 360.9 220 84.5
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 6.9e-98 360.9 230 81.3
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.9e-98 360.9 221 84.2
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 6.9e-98 360.9 220 83.2
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.2e-97 360.1 217 85.7
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.2e-97 360.1 220 83.2
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 3.4e-97 358.6 216 82.9
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 3.4e-97 358.6 217 82.5
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 3.4e-97 358.6 220 81.4
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 5.8e-97 357.8 220 81.8
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 7.6e-97 357.5 221 81.4
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 7.6e-97 357.5 218 81.7
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 9.9e-97 357.1 220 81.8
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 9.9e-97 357.1 220 80.9
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 1.3e-96 356.7 220 81.8
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.3e-96 356.7 219 83.1
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 1.3e-96 356.7 220 81.4
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 1.7e-96 356.3 218 82.6
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.2e-96 355.9 221 84.2
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 81.8
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 3.8e-96 355.1 218 82.6
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.8e-96 355.1 218 82.6
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.8e-96 355.1 218 82.6
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.8e-96 355.1 218 82.6
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 3.8e-96 355.1 218 83.0
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 4.9e-96 354.8 219 81.3
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 4.9e-96 354.8 219 82.6
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 4.9e-96 354.8 220 80.9
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 4.9e-96 354.8 222 82.4
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.4e-95 353.2 218 82.1
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.4e-95 353.2 219 80.8
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.9e-95 352.8 221 81.0
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 1.9e-95 352.8 219 80.8
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 2.4e-95 352.4 221 79.6
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 2.4e-95 352.4 218 81.7
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.4e-95 352.4 218 79.8
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 3.2e-95 352.1 220 81.8
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 4.2e-95 351.7 221 82.4
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 80.5
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 7.1e-95 350.9 219 81.3
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 7.1e-95 350.9 218 81.2
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 7.1e-95 350.9 221 81.0
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 7.1e-95 350.9 220 82.3
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 7.1e-95 350.9 220 82.3
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.2e-94 350.1 219 80.4
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.2e-94 350.1 220 79.5
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.6e-94 349.7 221 80.1
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 2.1e-94 349.4 219 81.3
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 80.4
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 4.6e-94 348.2 219 80.8
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 7.9e-94 347.4 219 80.4
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.0e-93 347.1 219 79.9
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 1.0e-93 347.1 219 79.5
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 1.3e-93 346.7 214 80.8
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.3e-93 345.9 219 79.0
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 3.9e-93 345.1 219 79.5
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 3.9e-93 345.1 218 78.9
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 3.9e-93 345.1 219 79.0
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 5.1e-93 344.7 220 79.5
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 5.1e-93 344.7 214 79.9
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 6.6e-93 344.4 219 79.9
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 79.1
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 79.1
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 1.5e-92 343.2 218 79.8
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.9e-92 342.8 215 80.9
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 80.5
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.5e-92 342.4 223 81.6
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.5e-92 342.4 222 77.0
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 9.6e-92 340.5 219 79.5
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.3e-91 340.1 221 78.3
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.3e-91 340.1 221 77.4
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.1e-91 339.3 216 81.0
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.2
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.6
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.2
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 8.1e-91 337.4 220 76.4
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 8.1e-91 337.4 218 76.1
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 1.8e-90 336.3 226 77.4
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 1.2e-81 307.0 175 82.9
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 2.0e-81 306.2 220 71.8
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 2.6e-81 305.8 165 89.7
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.3e-80 303.5 226 69.9
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.0e-77 293.9 194 76.3
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 2.3e-77 292.7 221 70.6
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.1e-74 283.9 165 85.5
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 6.9e-74 281.2 178 78.7
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 1.5e-73 280.0 177 76.3
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 7.6e-73 277.7 163 81.6
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.7e-72 276.6 172 78.5
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.5e-71 272.7 169 78.7
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 4.2e-71 271.9 171 77.8
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 2.2e-64 249.6 220 63.6
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 1.7e-59 233.4 224 58.0
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 4.8e-59 231.9 219 60.3
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 1.0e-56 224.2 220 59.1
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 7.7e-49 198.0 211 52.1
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 2.5e-47 193.0 211 52.6
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 3.0e-45 186.0 127 74.0
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.8e-42 176.8 150 57.3
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 5.9e-41 171.8 140 70.0
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 6.1e-30 135.2 105 71.4
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.3e-15 86.3 59 71.2
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.3e-15 86.3 59 71.2
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 7.5e-12 75.1 56 76.8
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.2e-06 57.8 57 57.9
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 4.7e-06 55.8 102 40.2


User provided reference genes

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