Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 8.7e-102 373.6 187 100.0
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 1.3e-100 369.8 187 98.9
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 1.3e-100 369.8 187 98.9
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 6.2e-100 367.5 188 98.9
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 2.4e-99 365.5 188 98.4
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 3.3e-85 318.5 190 88.4
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 7.7e-82 307.4 195 84.1
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 2.6e-74 282.3 197 77.7
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 3.6e-71 271.9 198 74.7
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 2.3e-70 269.2 198 73.7
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 2.3e-70 269.2 201 74.6
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 6.5e-65 251.1 202 70.8
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 5.5e-64 248.1 194 69.1
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 1.6e-55 219.9 197 60.4
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 4.4e-53 211.8 134 79.9
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 1.7e-52 209.9 112 86.6
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 2.8e-52 209.1 122 82.8
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 2.8e-52 209.1 201 59.2
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 3.7e-52 208.8 131 75.6
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 3.7e-52 208.8 112 87.5
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 3.7e-52 208.8 112 85.7
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 6.3e-52 208.0 144 72.2
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 6.3e-52 208.0 144 72.2
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 6.3e-52 208.0 183 60.7
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 8.3e-52 207.6 112 85.7
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 8.3e-52 207.6 112 86.6
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 1.4e-51 206.8 111 85.6
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.4e-51 206.8 201 57.2
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 1.8e-51 206.5 112 86.6
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 2.4e-51 206.1 136 73.5
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 2.4e-51 206.1 125 78.4
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.1e-51 205.7 201 56.7
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 4.1e-51 205.3 121 81.0
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 4.1e-51 205.3 181 63.5
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 4.1e-51 205.3 181 63.5
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 4.1e-51 205.3 146 69.9
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 5.4e-51 204.9 112 84.8
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 7.0e-51 204.5 201 58.2
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 9.1e-51 204.1 122 80.3
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 1.2e-50 203.8 140 71.4
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 1.2e-50 203.8 188 60.1
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.6e-50 203.4 139 70.5
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 2.0e-50 203.0 119 79.8
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 2.0e-50 203.0 123 77.2
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.7e-50 202.6 134 72.4
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 2.7e-50 202.6 201 57.7
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 2.7e-50 202.6 130 76.2
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 2.7e-50 202.6 144 70.1
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 5.9e-50 201.4 112 83.0
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 5.9e-50 201.4 203 58.1
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 7.7e-50 201.1 112 83.9
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 7.7e-50 201.1 192 57.8
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 7.7e-50 201.1 112 82.1
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 1.0e-49 200.7 112 83.0
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.7e-49 199.9 124 76.6
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 1.7e-49 199.9 192 56.2
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 6.5e-49 198.0 112 82.1
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 1.5e-48 196.8 142 66.2
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 1.5e-48 196.8 119 78.2
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.5e-48 196.8 185 60.5
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.9e-48 196.4 159 64.2
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 1.9e-48 196.4 162 61.7
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 1.9e-48 196.4 192 56.8
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 1.9e-48 196.4 135 70.4
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 2.5e-48 196.1 112 81.2
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 5.5e-48 194.9 129 71.3
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 7.2e-48 194.5 201 56.2
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 7.2e-48 194.5 196 56.1
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.2e-47 193.7 192 56.8
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 1.6e-47 193.4 154 61.7
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 1.6e-47 193.4 138 69.6
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 1.6e-47 193.4 196 55.6
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.6e-47 193.4 111 82.0
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.6e-47 193.4 111 82.0
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.6e-47 193.4 111 82.0
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 2.1e-47 193.0 121 76.0
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 2.7e-47 192.6 111 80.2
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.6e-47 192.2 193 56.5
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.6e-47 192.2 156 62.8
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 3.6e-47 192.2 112 79.5
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 4.7e-47 191.8 133 69.2
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 6.1e-47 191.4 111 78.4
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.0e-46 190.7 112 78.6
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 1.4e-46 190.3 112 78.6
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 1.8e-46 189.9 158 62.0
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 3.0e-46 189.1 203 55.2
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 3.0e-46 189.1 191 53.4
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 4.0e-46 188.7 158 61.4
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 8.8e-46 187.6 106 80.2
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 1.5e-45 186.8 112 77.7
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 3.4e-45 185.7 129 72.1
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 3.4e-45 185.7 111 75.7
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 4.4e-45 185.3 112 77.7
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 4.4e-45 185.3 111 75.7
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 5.7e-45 184.9 111 75.7
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 7.5e-45 184.5 201 52.2
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 2.2e-44 183.0 170 55.9
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 2.2e-44 183.0 112 77.7
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.9e-44 181.8 138 63.8
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 8.3e-44 181.0 140 61.4
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 8.3e-44 181.0 175 55.4
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.1e-43 180.6 140 60.7
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 3.1e-43 179.1 111 73.0
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 7.7e-42 174.5 204 49.0
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 1.5e-40 170.2 94 80.9
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.9e-40 169.9 146 58.9
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 2.5e-40 169.5 196 50.5
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 7.2e-40 167.9 150 58.0
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 7.2e-40 167.9 110 70.0
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.2e-39 167.2 108 71.3
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.6e-39 166.8 188 49.5
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 4.7e-39 165.2 156 55.8
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 1.0e-38 164.1 81 90.1
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.4e-38 163.7 137 56.2
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 1.4e-38 163.7 110 68.2
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.8e-38 163.3 103 72.8
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 4.0e-38 162.2 108 69.4
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 4.0e-38 162.2 108 68.5
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 6.4e-36 154.8 79 86.1
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 4.1e-35 152.1 107 64.5
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.3e-33 147.1 167 49.1
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 5.8e-29 131.7 144 46.5
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 7.5e-29 131.3 136 46.3
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 8.6e-25 117.9 106 55.7
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 4.3e-24 115.5 120 50.0
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 6.4e-20 101.7 151 39.1
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 9.9e-13 77.8 80 46.2


User provided reference genes

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