Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 1.1e-272 943.0 579 100.0
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 1.1e-272 943.0 579 100.0
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 1.1e-272 943.0 579 100.0
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 2.3e-249 865.5 582 93.1
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 5.0e-249 864.4 582 93.0
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 4.9e-228 794.7 585 77.1
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 7.1e-211 737.6 606 71.6
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 2.0e-181 639.8 611 68.9
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 3.0e-177 625.9 608 60.7
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 1.3e-172 610.5 611 60.1
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 1.7e-172 610.1 605 60.5
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 6.1e-170 601.7 612 65.2
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 4.5e-149 532.3 622 52.9
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 3.0e-108 396.7 626 44.2
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 3.9e-108 396.4 640 43.9
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 5.1e-84 316.2 635 36.7
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 1.1e-83 315.1 642 37.2
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 1.5e-83 314.7 645 40.6
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 7.4e-83 312.4 644 36.8
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 7.4e-83 312.4 644 36.8
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 1.3e-82 311.6 644 37.0
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 3.7e-82 310.1 613 37.8
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 5.3e-81 306.2 645 36.6
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 2.0e-80 304.3 645 40.5
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 2.5e-78 297.4 642 39.7
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 5.5e-78 296.2 622 37.0
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 1.6e-77 294.7 646 35.9
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 1.6e-77 294.7 615 36.7
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 6.0e-77 292.7 682 34.9
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 1.8e-76 291.2 683 34.1
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 5.1e-76 289.7 627 35.2
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 8.7e-76 288.9 639 34.7
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 1.5e-75 288.1 703 34.1
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 1.9e-75 287.7 702 33.8
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 4.3e-75 286.6 650 43.7
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 2.1e-74 284.3 647 34.3
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 4.8e-74 283.1 704 33.0
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 8.2e-74 282.3 693 33.9
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 1.8e-73 281.2 637 34.4
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 2.6e-72 277.3 620 35.2
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 4.5e-72 276.6 618 44.2
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 4.5e-72 276.6 623 35.2
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 1.3e-71 275.0 695 33.5
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 1.7e-71 274.6 602 39.5
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 2.9e-71 273.9 649 36.7
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 1.9e-70 271.2 713 38.6
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 2.1e-69 267.7 596 35.7
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 4.6e-69 266.5 659 41.6
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 6.1e-69 266.2 617 36.3
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 7.9e-69 265.8 614 37.6
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 3.0e-68 263.8 690 32.0
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 5.1e-68 263.1 603 34.8
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 1.9e-67 261.2 697 32.6
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 1.9e-67 261.2 614 34.5
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 1.6e-66 258.1 587 34.4
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 8.2e-66 255.8 625 40.5
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 1.4e-65 255.0 683 32.8
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 3.1e-65 253.8 607 34.4
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 1.2e-64 251.9 682 31.4
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 1.5e-64 251.5 617 32.7
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 3.4e-64 250.4 655 31.6
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 3.8e-63 246.9 702 39.0
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 8.5e-63 245.7 604 36.1
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 3.2e-62 243.8 606 40.9
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 7.9e-61 239.2 680 30.4
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 2.2e-58 231.1 608 39.3
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 8.2e-58 229.2 622 33.0
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 5.3e-57 226.5 704 30.0
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 1.4e-54 218.4 613 31.8
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 1.9e-54 218.0 610 32.3
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.2e-54 216.9 622 32.0
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 5.5e-54 216.5 304 44.7
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 2.7e-53 214.2 617 31.3
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 2.7e-53 214.2 312 43.3
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 1.0e-52 212.2 624 31.7
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 2.3e-52 211.1 644 30.9
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 2.0e-51 208.0 300 46.0
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.6e-51 207.6 616 31.8
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 1.7e-50 204.9 610 34.1
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 2.8e-50 204.1 315 44.8
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 6.3e-50 203.0 629 28.3
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 1.6e-48 198.4 608 31.1
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 1.0e-47 195.7 613 30.8
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 1.7e-47 194.9 579 29.2
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 2.9e-47 194.1 602 30.7
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 3.8e-47 193.7 314 41.4
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 3.8e-47 193.7 704 30.4
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 6.5e-47 193.0 309 41.7
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 5.5e-46 189.9 183 54.6
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.6e-45 188.3 258 42.6
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.7e-45 186.8 675 33.3
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 1.8e-44 184.9 628 30.6
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 3.0e-44 184.1 353 39.4
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 1.5e-43 181.8 605 28.9
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 4.4e-43 180.3 360 36.7
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 4.4e-43 180.3 646 27.6
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 2.8e-42 177.6 594 28.5
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 6.3e-42 176.4 597 34.7
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 1.1e-41 175.6 502 36.7
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 2.2e-39 167.9 192 49.0
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 4.2e-38 163.7 615 26.8
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 3.0e-36 157.5 296 38.2
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 4.5e-32 143.7 177 50.3
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 1.3e-31 142.1 87 75.9
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 3.2e-30 137.5 80 80.0
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 7.2e-30 136.3 599 26.5
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 1.6e-29 135.2 175 45.1
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 2.3e-28 131.3 659 24.1
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 3.0e-28 131.0 170 42.9
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 4.0e-28 130.6 291 36.8
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 5.9e-24 116.7 462 27.7
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 1.0e-23 115.9 402 29.1
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.9e-22 111.7 151 45.7
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 9.5e-22 109.4 314 31.8
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 5.2e-20 103.6 77 58.4
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 3.7e-18 97.4 308 30.8
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 1.8e-17 95.1 177 38.4
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 1.7e-15 88.6 262 30.5
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 3.9e-15 87.4 144 41.7
THA.LOC109117177 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.4e-12 79.0 211 34.6
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 7.0e-09 66.6 201 33.8
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 2.0e-08 65.1 85 37.6
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 3.5e-08 64.3 170 35.3
SMO351G0024 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 1.9e-06 58.5 51 54.9
HPP92_006144 Vanilla planifolia HOM05D002569 ORTHO05D006728 2.5e-06 58.2 192 28.1


User provided reference genes

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