Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 6.7e-119 430.6 209 100.0
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.3e-117 426.4 207 100.0
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 6.5e-98 360.9 207 87.9
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.2e-72 276.9 183 78.7
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 8.3e-53 211.1 114 92.1
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 3.2e-52 209.1 137 77.4
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.5e-46 190.3 140 70.7
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 4.4e-46 188.7 140 70.7
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 7.6e-46 188.0 137 71.5
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.4e-44 183.7 140 69.3
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 3.2e-44 182.6 140 70.0
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 3.2e-44 182.6 140 70.0
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 3.2e-44 182.6 140 70.0
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 5.4e-44 181.8 140 67.9
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 7.1e-44 181.4 140 69.3
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 7.1e-44 181.4 140 69.3
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.3e-40 170.6 129 69.8
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 8.4e-37 157.9 144 56.9
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.9e-36 156.8 142 57.7
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 3.2e-36 156.0 136 60.3
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 4.2e-36 155.6 167 52.1
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 9.3e-36 154.5 142 57.7
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 2.7e-35 152.9 144 57.6
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 7.8e-35 151.4 142 55.6
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.0e-34 151.0 134 59.0
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.3e-34 150.6 142 55.6
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.7e-34 150.2 142 54.2
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 5.1e-34 148.7 142 57.0
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 6.6e-34 148.3 154 53.9
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 8.7e-34 147.9 134 56.7
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 1.1e-33 147.5 134 58.2
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.5e-33 146.4 140 55.0
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.3e-33 145.6 134 56.7
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 4.3e-33 145.6 131 58.0
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 9.6e-33 144.4 134 57.5
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 9.6e-33 144.4 131 58.8
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 9.6e-33 144.4 142 53.5
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 9.6e-33 144.4 131 57.3
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.3e-32 144.1 142 54.2
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.3e-32 144.1 134 56.0
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 2.8e-32 142.9 134 55.2
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 4.8e-32 142.1 140 55.7
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 4.8e-32 142.1 134 56.0
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-32 142.1 134 56.0
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-32 142.1 134 56.0
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-32 142.1 134 56.0
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-32 142.1 134 56.0
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 4.8e-32 142.1 173 48.0
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 8.1e-32 141.4 134 55.2
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 1.1e-31 141.0 131 57.3
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 1.1e-31 141.0 131 57.3
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.4e-31 140.6 142 52.8
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.4e-31 140.6 173 47.4
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.8e-31 140.2 173 47.4
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 2.4e-31 139.8 142 51.4
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 2.4e-31 139.8 142 51.4
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 3.1e-31 139.4 157 51.0
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 3.1e-31 139.4 131 55.0
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 3.1e-31 139.4 173 47.4
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 4.0e-31 139.0 173 46.8
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.0e-31 139.0 173 46.8
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 5.3e-31 138.7 132 56.1
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 9.0e-31 137.9 142 51.4
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 9.0e-31 137.9 142 52.8
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 9.0e-31 137.9 142 52.8
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.2e-30 137.5 144 49.3
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.5e-30 137.1 142 50.7
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.5e-30 137.1 142 50.7
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 2.6e-30 136.3 131 55.7
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 4.5e-30 135.6 131 54.2
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 5.8e-30 135.2 126 54.0
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 5.8e-30 135.2 126 54.0
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 7.6e-30 134.8 159 47.2
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 9.9e-30 134.4 142 49.3
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.3e-29 134.0 131 55.7
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.9e-29 132.9 142 50.7
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 2.9e-29 132.9 130 54.6
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 3.8e-29 132.5 131 53.4
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 8.4e-29 131.3 131 53.4
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 8.4e-29 131.3 131 52.7
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.9e-28 130.2 138 51.4
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.9e-28 130.2 131 51.9
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 4.2e-28 129.0 142 48.6
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 5.4e-28 128.6 144 47.9
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.4e-28 128.6 139 51.8
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.7e-27 126.3 133 51.1
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 6.0e-27 125.2 157 47.8
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.3e-25 119.4 124 52.4
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 3.3e-25 119.4 142 46.5
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 9.6e-25 117.9 153 45.8
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 2.1e-24 116.7 141 48.2
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.7e-24 115.9 142 46.5
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 6.2e-24 115.2 142 45.8
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.8e-23 113.6 139 45.3
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 1.8e-23 113.6 173 41.6
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 2.6e-22 109.8 110 52.7
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.0e-21 107.8 110 53.6
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.0e-21 107.8 62 82.3
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 2.2e-21 106.7 110 51.8
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.8e-21 105.9 142 43.0
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.8e-21 105.9 142 43.0
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 3.8e-21 105.9 66 74.2
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 4.9e-21 105.5 134 44.0
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 6.5e-21 105.1 153 41.2
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.4e-20 104.0 68 70.6
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.5e-20 103.2 58 84.5
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.5e-20 103.2 58 84.5
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 5.5e-20 102.1 66 68.2
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 9.3e-20 101.3 58 82.8
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.2e-19 100.9 139 43.2
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.2e-19 100.9 110 51.8
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 1.2e-19 100.9 60 78.3
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 2.1e-19 100.1 68 66.2
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 2.1e-19 100.1 66 69.7
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.1e-19 100.1 134 42.5
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 2.1e-19 100.1 71 67.6
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 3.5e-19 99.4 74 66.2
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 4.6e-19 99.0 66 68.2
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 4.6e-19 99.0 99 53.5
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 6.0e-19 98.6 58 77.6
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 6.0e-19 98.6 142 40.1
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 6.0e-19 98.6 142 40.8
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 7.9e-19 98.2 132 42.4
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.8e-18 97.1 116 46.6
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.3e-18 96.7 71 64.8
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.1e-18 95.5 70 62.9
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.1e-18 95.5 70 62.9
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 6.7e-18 95.1 130 40.8
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.1e-17 94.4 66 63.6
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.5e-17 94.0 58 77.6
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 1.5e-17 94.0 58 74.1
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 3.3e-17 92.8 66 62.1
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 9.6e-17 91.3 146 42.5
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.3e-13 80.9 47 78.7
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 5.5e-12 75.5 68 54.4
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 6.1e-11 72.0 54 64.8
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.5e-09 67.4 41 70.7
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 5.3e-07 58.9 50 56.0
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.2e-06 57.8 44 63.6


User provided reference genes

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