Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 5.1e-165 584.3 296 100.0
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 5.1e-165 584.3 296 100.0
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 1.4e-154 549.7 293 93.5
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 7.0e-154 547.4 293 93.2
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 2.0e-137 492.7 274 91.2
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 2.7e-137 492.3 279 89.6
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 4.7e-134 481.5 274 88.0
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 5.2e-133 478.0 274 86.9
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 6.8e-133 477.6 276 87.3
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 3.4e-132 475.3 274 86.5
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 1.7e-131 473.0 279 86.4
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 2.2e-131 472.6 279 85.7
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 5.9e-129 464.5 279 84.2
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 9.5e-127 457.2 279 83.9
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 1.3e-123 446.8 266 83.8
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 2.7e-113 412.5 279 75.3
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 1.9e-103 379.8 268 70.5
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 2.3e-101 372.9 258 70.9
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 3.1e-101 372.5 259 71.8
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 3.1e-101 372.5 258 70.9
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 6.8e-101 371.3 248 73.4
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 8.9e-101 370.9 258 72.5
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 8.9e-101 370.9 256 72.3
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 2.0e-100 369.8 259 72.2
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 4.4e-100 368.6 253 71.9
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 6.4e-99 364.8 273 67.4
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 8.4e-99 364.4 252 71.0
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 1.1e-98 364.0 257 70.0
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 1.4e-98 363.6 258 69.0
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 2.4e-98 362.8 260 70.8
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 4.1e-98 362.1 252 70.2
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 9.2e-98 360.9 261 70.5
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 1.2e-97 360.5 264 67.8
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 1.6e-97 360.1 255 69.4
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 1.6e-97 360.1 257 69.6
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 3.5e-97 359.0 266 66.9
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 6.0e-97 358.2 255 69.4
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 6.0e-97 358.2 245 72.2
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 1.0e-96 357.5 248 69.0
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 1.0e-96 357.5 262 67.6
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 1.3e-96 357.1 261 67.4
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 1.7e-96 356.7 250 71.2
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 2.3e-96 356.3 262 66.0
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 2.3e-96 356.3 256 69.1
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 5.1e-96 355.1 241 73.0
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 8.6e-96 354.4 270 67.0
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 1.9e-95 353.2 267 67.0
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 1.9e-95 353.2 258 68.2
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 2.5e-95 352.8 261 67.4
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 2.5e-95 352.8 267 67.0
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 2.5e-95 352.8 267 67.0
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 2.5e-95 352.8 241 71.4
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 2.5e-95 352.8 243 71.2
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 5.6e-95 351.7 256 68.0
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 5.6e-95 351.7 264 67.8
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 5.6e-95 351.7 241 71.4
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 7.3e-95 351.3 256 68.8
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 9.6e-95 350.9 244 69.7
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 1.2e-94 350.5 255 68.2
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 2.1e-94 349.7 256 68.4
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 2.8e-94 349.4 253 67.6
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 2.8e-94 349.4 244 71.3
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 6.2e-94 348.2 259 69.1
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 6.2e-94 348.2 235 73.6
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 8.1e-94 347.8 260 65.8
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 8.1e-94 347.8 264 67.0
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 1.8e-93 346.7 274 63.1
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 6.9e-93 344.7 285 61.4
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 8.9e-93 344.4 274 64.2
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 8.9e-93 344.4 293 60.8
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 1.2e-92 344.0 259 66.4
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 1.5e-92 343.6 243 69.5
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 2.6e-92 342.8 285 62.5
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 2.2e-91 339.7 252 68.3
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 2.9e-91 339.3 267 64.4
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 3.8e-91 339.0 274 62.4
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 3.8e-91 339.0 245 69.0
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 8.4e-91 337.8 262 64.5
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 4.2e-90 335.5 246 67.1
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 1.6e-89 333.6 244 67.6
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 2.1e-89 333.2 248 62.5
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 2.7e-89 332.8 246 67.5
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 3.5e-89 332.4 263 61.2
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 4.6e-89 332.0 240 68.3
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 1.7e-88 330.1 325 55.1
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 1.5e-87 327.0 224 71.9
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 3.3e-87 325.9 248 66.9
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 4.3e-87 325.5 241 66.8
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 1.3e-86 323.9 366 48.9
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 4.8e-86 322.0 261 62.8
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 2.4e-85 319.7 221 71.5
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 3.1e-85 319.3 225 71.1
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 6.9e-85 318.2 256 67.2
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 4.5e-84 315.5 223 69.5
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 4.5e-84 315.5 223 68.2
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 2.2e-83 313.2 221 69.2
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 1.9e-82 310.1 224 69.6
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 1.3e-80 303.9 234 64.5
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 2.5e-79 299.7 214 69.2
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 1.6e-78 297.0 212 70.8
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 1.3e-70 270.8 317 50.8
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 1.3e-70 270.8 214 60.7
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 1.8e-69 266.9 236 58.9
Atru.chr12.1174 Acer truncatum HOM05D005955 ORTHO05D007633 3.2e-66 256.1 187 71.1
BraA09t40201Z Brassica rapa HOM05D005955 ORTHO05D007633 1.5e-63 247.3 149 85.2
AagrBONN_evm.TU.Sc2ySwM_344.4523 Anthoceros agrestis HOM05D005955 ORTHO05D007633 2.5e-63 246.5 237 51.5
Dinv09283 Davidia involucrata HOM05D005955 ORTHO05D007633 2.1e-62 243.4 180 70.0
BolC8t50572H Brassica oleracea HOM05D005955 ORTHO05D007633 1.4e-61 240.7 149 81.9
BolC8t50570H Brassica oleracea HOM05D005955 ORTHO05D007633 6.9e-61 238.4 149 81.2
Pp3c5_2560 Physcomitrium patens HOM05D005955 ORTHO05D007633 1.5e-60 237.3 253 49.0
SMO172G0212 Selaginella moellendorffii HOM05D005955 ORTHO05D007633 3.4e-60 236.1 257 47.5
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 7.6e-60 235.0 148 73.0
CARHR164380 Cardamine hirsuta HOM05D005955 ORTHO05D007633 1.5e-55 220.7 129 86.0
CBR_g30624 Chara braunii HOM05D005955 ORTHO05D007633 1.0e-51 208.0 244 44.3
Manes.08G167250 Manihot esculenta HOM05D005955 ORTHO05D007633 1.7e-46 190.7 146 67.8
AUR62037202 Chenopodium quinoa HOM05D005955 ORTHO05D007633 3.8e-43 179.5 149 60.4
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 1.2e-41 174.5 125 65.6
C08p29620 Brassica napus HOM05D005955 ORTHO05D007633 2.7e-41 173.3 106 82.1
Ciclev10002701m.g Citrus clementina HOM05D005955 ORTHO05D007633 6.1e-41 172.2 188 51.6
Manes.11G001251 Manihot esculenta HOM05D005955 ORTHO05D007633 2.0e-36 157.1 127 65.4
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 2.7e-33 146.7 96 75.0
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 7.5e-31 138.7 95 72.6
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 1.0e-24 118.2 84 61.9
Migut.N01795 Erythranthe guttata HOM05D005955 ORTHO05D007633 2.3e-19 100.5 130 47.7
BcaC08g45413 Brassica carinata HOM05D005955 ORTHO05D007633 1.8e-16 90.9 127 47.2
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 2.3e-16 90.5 47 83.0
PRCOL_00001745 Prasinoderma coloniale HOM05D005955 ORTHO05D007633 5.2e-16 89.4 169 31.4
BcaB05g22681 Brassica carinata HOM05D005955 ORTHO05D007633 6.8e-16 89.0 127 47.2
BolC4t25378H Brassica oleracea HOM05D005955 ORTHO05D007633 2.8e-14 83.6 47 93.6


User provided reference genes

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