Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09064 Brassica carinata HOM05D004414 ORTHO05D001824 2.0e-124 449.1 225 100.0
C04p38010 Brassica napus HOM05D004414 ORTHO05D028135 4.2e-50 202.2 102 98.0
Sp5g07920 Schrenkiella parvula HOM05D004414 ORTHO05D001824 1.5e-47 193.7 441 35.4
Thhalv10010203m.g Eutrema salsugineum HOM05D004414 ORTHO05D001824 1.0e-43 181.0 441 35.1
BcaB02g07735 Brassica carinata HOM05D004414 ORTHO05D001824 2.3e-40 169.9 467 32.5
C04p38020 Brassica napus HOM05D004414 ORTHO05D001824 4.3e-39 165.6 96 90.6
BraA07t29897Z Brassica rapa HOM05D004414 ORTHO05D001824 4.3e-39 165.6 462 33.8
A07p22140 Brassica napus HOM05D004414 ORTHO05D001824 7.4e-39 164.9 456 34.0
BolC4t25375H Brassica oleracea HOM05D004414 ORTHO05D001824 8.2e-38 161.4 99 86.9
BolC6t37405H Brassica oleracea HOM05D004414 ORTHO05D001824 9.0e-37 157.9 456 32.9
BcaC08g44684 Brassica carinata HOM05D004414 ORTHO05D001824 1.5e-36 157.1 456 32.9
C06p22190 Brassica napus HOM05D004414 ORTHO05D001824 1.5e-36 157.1 456 32.9
AL5G35550 Arabidopsis lyrata HOM05D004414 ORTHO05D001824 2.0e-36 156.8 470 31.5
BcaC07g39819 Brassica carinata HOM05D004414 ORTHO05D001824 1.6e-33 147.1 378 33.3
Carub.0005s2112 Capsella rubella HOM05D004414 ORTHO05D001824 1.6e-33 147.1 471 30.6
BolC4t25374H Brassica oleracea HOM05D037785 ORTHO05D028135 3.3e-31 139.4 89 83.1
BcaB01g00189 Brassica carinata HOM05D004414 ORTHO05D001824 1.6e-30 137.1 404 31.2
AT3G54500 Arabidopsis thaliana HOM05D004414 ORTHO05D001824 6.3e-30 135.2 101 71.3
CARHR164400 Cardamine hirsuta HOM05D004414 ORTHO05D001824 7.7e-28 128.3 101 66.3
Aa31sc434G10 Aethionema arabicum HOM05D004414 ORTHO05D001824 5.7e-23 112.1 101 61.4
THA.LOC104801739 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 5.3e-21 105.5 116 54.3
THA.LOC104824187 Tarenaya hassleriana HOM05D004414 ORTHO05D001824 1.8e-16 90.5 103 55.3
Atru.chr12.1399 Acer truncatum HOM05D004414 ORTHO05D001824 1.3e-14 84.3 86 55.8
BcaC07g39817 Brassica carinata HOM05D004414 ORTHO05D001824 2.8e-14 83.2 83 57.8
Cpa.g.sc223.14 Carica papaya HOM05D004414 ORTHO05D001824 2.8e-14 83.2 92 52.2
FAN03G1361 Fragaria x ananassa HOM05D004414 ORTHO05D001824 4.8e-14 82.4 92 54.3
FAN10G4033 Fragaria x ananassa HOM05D004414 ORTHO05D001824 4.8e-14 82.4 92 54.3
RcHm_v2.0_Chr1g0321761 Rosa chinensis HOM05D004414 ORTHO05D001824 4.8e-14 82.4 92 53.3
Duzib114G0298 Durio zibethinus HOM05D004414 ORTHO05D001824 6.3e-14 82.0 90 53.3
FAN06G1884 Fragaria x ananassa HOM05D004414 ORTHO05D001824 3.1e-13 79.7 92 51.1
FvH4_7g02700 Fragaria vesca HOM05D004414 ORTHO05D001824 4.1e-13 79.3 92 51.1
Thecc.10G167000 Theobroma cacao HOM05D004414 ORTHO05D001824 9.1e-13 78.2 93 51.6
CiPaw.13G012100 Carya illinoinensis HOM05D004414 ORTHO05D001824 2.0e-12 77.0 92 48.9
Dinv09256 Davidia involucrata HOM05D004414 ORTHO05D001824 2.0e-12 77.0 86 50.0
Ciclev10004446m.g Citrus clementina HOM05D004414 ORTHO05D001824 2.6e-12 76.6 90 50.0
COL.COLO4_09984 Corchorus olitorius HOM05D004414 ORTHO05D001824 2.6e-12 76.6 90 51.1
Duzib106G1605 Durio zibethinus HOM05D004414 ORTHO05D001824 3.5e-12 76.3 89 50.6
Prupe.2G032000 Prunus persica HOM05D004414 ORTHO05D001824 3.5e-12 76.3 110 46.4
FAN01G0485 Fragaria x ananassa HOM05D004414 ORTHO05D001824 5.9e-12 75.5 92 52.2
ClCG05G026710 Citrullus lanatus HOM05D004414 ORTHO05D001824 1.0e-11 74.7 92 48.9
Duzib128G0092 Durio zibethinus HOM05D004414 ORTHO05D001824 1.0e-11 74.7 90 52.2
MD02G1290900 Malus domestica HOM05D004414 ORTHO05D001824 1.0e-11 74.7 92 50.0
Potri.003G200300 Populus trichocarpa HOM05D004414 ORTHO05D001824 1.0e-11 74.7 91 47.3
GSVIVG01000669001 Vitis vinifera HOM05D004414 ORTHO05D001824 1.0e-11 74.7 111 45.0
Haze_03067 Corylus avellana HOM05D004414 ORTHO05D001824 1.3e-11 74.3 92 50.0
Glyma.11G154700 Glycine max HOM05D004414 ORTHO05D001824 1.3e-11 74.3 92 47.8
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 1.3e-11 74.3 84 51.2
Potri.T126406 Populus trichocarpa HOM05D004414 ORTHO05D001824 2.2e-11 73.6 91 49.5
Potri.003G200600 Populus trichocarpa HOM05D004414 ORTHO05D001824 5.0e-11 72.4 91 46.2
Potri.T127206 Populus trichocarpa HOM05D004414 ORTHO05D001824 5.0e-11 72.4 91 46.2
COL.COLO4_09982 Corchorus olitorius HOM05D004414 ORTHO05D001824 6.5e-11 72.0 86 48.8
arahy.Tifrunner.gnm1.ann1.XZ22FX Arachis hypogaea HOM05D004414 ORTHO05D001824 8.5e-11 71.6 92 47.8
Lj3g0012335 Lotus japonicus HOM05D004414 ORTHO05D001824 8.5e-11 71.6 91 49.5
Potri.T126606 Populus trichocarpa HOM05D004414 ORTHO05D001824 8.5e-11 71.6 91 46.2
Potri.T126906 Populus trichocarpa HOM05D004414 ORTHO05D001824 1.1e-10 71.2 86 47.7
TWI15G1156 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 1.1e-10 71.2 89 50.6
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 1.5e-10 70.9 91 49.5
Glyma.13G199300 Glycine max HOM05D004414 ORTHO05D001824 1.5e-10 70.9 92 45.7
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 1.5e-10 70.9 91 48.4
arahy.Tifrunner.gnm1.ann1.19HB3K Arachis hypogaea HOM05D004414 ORTHO05D001824 1.9e-10 70.5 92 47.8
Phvul.005G029800 Phaseolus vulgaris HOM05D004414 ORTHO05D001824 2.5e-10 70.1 92 48.9
MELO3C012461.2 Cucumis melo HOM05D004414 ORTHO05D001824 3.2e-10 69.7 94 44.7
Dinv32037 Davidia involucrata HOM05D004414 ORTHO05D001824 5.5e-10 68.9 122 37.7
VMungo1080G0433 Vigna mungo HOM05D004414 ORTHO05D001824 5.5e-10 68.9 92 44.6
Cpa.g.sc223.17 Carica papaya HOM05D004414 ORTHO05D001824 7.2e-10 68.6 115 41.7
Glyma.15G237600 Glycine max HOM05D004414 ORTHO05D001824 7.2e-10 68.6 92 43.5
Potri.001G025100 Populus trichocarpa HOM05D004414 ORTHO05D001824 7.2e-10 68.6 86 46.5
Sabra03G0148200 Salix brachista HOM05D004414 ORTHO05D001824 7.2e-10 68.6 103 41.7
Glyma.04G141400 Glycine max HOM05D004414 ORTHO05D001824 1.2e-09 67.8 73 53.4
Lalb_Chr01g0007921 Lupinus albus HOM05D004414 ORTHO05D001824 1.2e-09 67.8 93 44.1
CiPaw.14G006500 Carya illinoinensis HOM05D004414 ORTHO05D001824 1.6e-09 67.4 81 49.4
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.6e-09 67.4 90 47.8
VMungo1127G0555 Vigna mungo HOM05D004414 ORTHO05D001824 2.1e-09 67.0 92 43.5
Actinidia06255 Actinidia chinensis HOM05D004414 ORTHO05D001824 2.7e-09 66.6 93 46.2
Nn7g36611 Nelumbo nucifera HOM05D004414 ORTHO05D001824 6.1e-09 65.5 84 47.6
Cc00_g16250 Coffea canephora HOM05D004414 ORTHO05D001824 8.0e-09 65.1 85 45.9
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.0e-08 64.7 90 46.7
TAR369G0352 Trochodendron aralioides HOM05D004414 ORTHO05D001824 1.4e-08 64.3 92 45.7
A04p05330 Brassica napus HOM05D037785 ORTHO05D028135 1.8e-08 63.9 65 56.9
BraA04t16233Z Brassica rapa HOM05D037785 ORTHO05D028135 1.8e-08 63.9 65 56.9
Lj9A655T40 Lonicera japonica HOM05D004414 ORTHO05D001824 1.8e-08 63.9 66 53.0
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 2.3e-08 63.5 88 44.3
Rhsim07G0065500 Rhododendron simsii HOM05D004414 ORTHO05D001824 3.0e-08 63.2 107 41.1
Hund13341 Selenicereus undatus HOM05D004414 ORTHO05D001824 3.0e-08 63.2 90 44.4
vmacro22867 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 3.0e-08 63.2 101 42.6
Cc00_g03090 Coffea canephora HOM05D004414 ORTHO05D001824 6.7e-08 62.0 113 38.1
Manes.04G165400 Manihot esculenta HOM05D004414 ORTHO05D001824 6.7e-08 62.0 71 52.1
SalBow5G0980 Salvia bowleyana HOM05D004414 ORTHO05D001824 6.7e-08 62.0 99 41.4
SalBow5G2656 Salvia bowleyana HOM05D004414 ORTHO05D001824 6.7e-08 62.0 99 41.4
vmacro22979 Vaccinium macrocarpon HOM05D004414 ORTHO05D001824 6.7e-08 62.0 101 42.6
Sed0007735 Sechium edule HOM05D004414 ORTHO05D001824 8.8e-08 61.6 94 43.6
Oeu056557.1 Olea europaea HOM05D004414 ORTHO05D001824 1.1e-07 61.2 69 50.7
AUR62037207 Chenopodium quinoa HOM05D004414 ORTHO05D001824 1.5e-07 60.8 88 44.3
CsaV3_5G036640 Cucumis sativus L. HOM05D004414 ORTHO05D001824 1.5e-07 60.8 114 38.6
Hma1.2p1_1251F.1_g270410 Hydrangea macrophylla HOM05D004414 ORTHO05D001824 1.5e-07 60.8 99 41.4
DCAR_003244 Daucus carota HOM05D001375 ORTHO05D001222 2.0e-07 60.5 87 46.0
QL04p014278 Quercus lobata HOM05D004414 ORTHO05D001824 2.0e-07 60.5 92 43.5
Ah.12g062930 Amaranthus hybridus HOM05D004414 ORTHO05D001824 2.6e-07 60.1 90 44.4
Migut.B01215 Erythranthe guttata HOM05D004414 ORTHO05D001824 2.6e-07 60.1 75 45.3
Sed0019716 Sechium edule HOM05D004414 ORTHO05D001824 3.3e-07 59.7 100 41.0
MSTRG.20525 Avicennia marina HOM05D004414 ORTHO05D001824 4.4e-07 59.3 95 42.1
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 4.4e-07 59.3 89 41.6
CDE03G0404 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 4.4e-07 59.3 77 41.6
Sc10g0004350 Simmondsia chinensis HOM05D004414 ORTHO05D001824 4.4e-07 59.3 86 44.2
CAN.G179.18 Capsicum annuum HOM05D004414 ORTHO05D001824 7.5e-07 58.5 73 43.8
Cc11_g01940 Coffea canephora HOM05D004414 ORTHO05D001824 7.5e-07 58.5 111 37.8
Sed0006995 Sechium edule HOM05D003662 ORTHO05D001824 7.5e-07 58.5 69 46.4
Sed0005558 Sechium edule HOM05D003662 ORTHO05D001824 9.7e-07 58.2 118 35.6
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 1.3e-06 57.8 103 46.6
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 2.2e-06 57.0 87 43.7
TPR.G9876 Trifolium pratense HOM05D004414 ORTHO05D001824 2.2e-06 57.0 90 43.3
Aqoxy1G00343 Aquilegia oxysepala HOM05D004414 ORTHO05D001824 2.8e-06 56.6 70 45.7
BcaB02g09780 Brassica carinata HOM05D003662 ORTHO05D001824 4.8e-06 55.8 70 42.9
BcaC01g02674 Brassica carinata HOM05D003662 ORTHO05D001824 4.8e-06 55.8 128 28.9
C03p62080 Brassica napus HOM05D003662 ORTHO05D001824 4.8e-06 55.8 128 28.9
BolC3t18469H Brassica oleracea HOM05D003662 ORTHO05D001824 4.8e-06 55.8 128 28.9
AUR62026844 Chenopodium quinoa HOM05D004414 ORTHO05D001824 4.8e-06 55.8 88 42.0
MBI13_g36284_MAGBIO Magnolia biondii HOM05D004414 ORTHO05D001824 4.8e-06 55.8 96 41.7


User provided reference genes

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