Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 2.8e-300 1034.6 578 100.0
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 9.7e-269 929.9 541 95.4
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.7e-265 919.1 579 87.7
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.3e-262 908.7 555 89.9
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 7.0e-251 870.5 595 80.3
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.2e-250 869.8 593 77.9
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 1.2e-247 859.8 587 78.5
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 3.6e-247 858.2 584 79.1
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 6.1e-247 857.4 584 79.3
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.5e-245 852.8 587 77.5
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.5e-245 852.8 587 77.7
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.5e-245 852.8 583 77.9
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 1.8e-243 845.9 595 76.5
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.0e-241 840.1 596 76.3
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 8.6e-241 837.0 595 75.6
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 4.3e-232 808.1 596 73.3
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.9e-219 766.1 571 74.6
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.1e-216 756.9 591 68.4
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 9.3e-211 737.3 437 93.1
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 3.3e-192 675.6 566 65.7
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.0e-189 666.4 546 65.8
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.3e-177 627.1 572 60.0
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 5.1e-177 625.2 563 61.5
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 6.7e-177 624.8 574 59.6
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.5e-176 623.6 564 62.4
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.9e-176 623.2 574 59.4
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.6e-175 620.2 568 62.3
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.2e-175 619.8 566 61.7
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.8e-175 619.4 572 59.4
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.7e-175 619.0 564 60.6
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.8e-174 616.7 578 62.6
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.4e-174 616.3 574 58.5
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 3.1e-174 615.9 574 58.9
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 5.3e-174 615.1 571 61.3
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 1.5e-173 613.6 564 60.5
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 5.9e-173 611.7 559 58.7
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.0e-172 610.9 568 62.5
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 1.1e-171 607.4 582 59.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 2.1e-170 603.2 583 60.7
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 3.6e-170 602.4 574 61.0
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 4.6e-170 602.1 573 58.8
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 1.8e-169 600.1 565 60.2
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 8.8e-169 597.8 581 58.3
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 2.0e-168 596.7 584 59.2
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 2.6e-168 596.3 584 60.3
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 2.6e-168 596.3 576 55.2
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 2.6e-168 596.3 617 55.3
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 2.6e-168 596.3 571 58.7
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.3e-167 594.0 568 59.2
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.2e-167 593.2 563 57.4
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 2.2e-167 593.2 578 56.1
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 2.2e-167 593.2 620 57.1
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 6.3e-167 591.7 575 58.1
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.1e-166 589.3 570 56.5
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 4.1e-166 589.0 587 55.4
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 4.1e-166 589.0 504 60.7
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 4.1e-166 589.0 599 54.9
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 5.3e-166 588.6 590 57.3
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.2e-165 587.4 559 57.6
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 2.0e-165 586.6 613 55.3
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 2.0e-165 586.6 593 56.5
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 2.0e-165 586.6 552 57.8
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 2.6e-165 586.3 609 54.2
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 2.6e-165 586.3 562 57.7
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.6e-165 586.3 578 57.6
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 5.9e-165 585.1 568 58.6
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 5.9e-165 585.1 570 56.1
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.3e-164 583.9 613 55.1
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 2.9e-164 582.8 619 53.0
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 3.8e-164 582.4 584 58.4
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 6.5e-164 581.6 609 54.2
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 8.5e-164 581.3 584 56.5
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 2.5e-163 579.7 579 56.6
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.5e-163 579.7 572 56.1
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 5.5e-163 578.6 562 56.8
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 2.1e-162 576.6 601 52.9
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 2.1e-162 576.6 548 58.9
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 2.7e-162 576.2 562 56.2
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 3.6e-162 575.9 574 57.8
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 3.6e-162 575.9 611 54.7
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 3.6e-162 575.9 582 54.6
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 4.7e-162 575.5 485 66.6
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 6.1e-162 575.1 572 55.8
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.0e-161 574.3 586 57.0
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 1.8e-161 573.5 601 52.7
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 3.0e-161 572.8 579 56.3
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 3.0e-161 572.8 562 58.9
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 3.0e-161 572.8 577 57.2
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 5.2e-161 572.0 613 53.8
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.2e-161 572.0 586 55.1
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 6.7e-161 571.6 573 58.5
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 8.8e-161 571.2 543 60.8
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 8.8e-161 571.2 578 54.8
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.5e-160 570.5 604 57.3
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.5e-160 570.5 587 56.9
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 3.3e-160 569.3 488 64.5
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 4.4e-160 568.9 572 56.1
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 5.7e-160 568.5 599 55.4
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 5.7e-160 568.5 554 56.5
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 9.7e-160 567.8 548 56.0
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.7e-159 567.0 612 52.6
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 4.8e-159 565.5 557 56.0
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.1e-158 564.3 588 54.6
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.4e-158 563.9 607 53.4
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.4e-158 563.1 586 56.3
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.4e-158 563.1 578 56.9
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 5.3e-158 562.0 546 57.9
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 1.2e-157 560.8 566 57.6
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 7.7e-157 558.1 488 60.9
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 7.7e-157 558.1 543 55.6
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.3e-156 557.4 566 58.1
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 1.7e-156 557.0 587 56.7
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 8.5e-156 554.7 568 59.2
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.2e-155 552.4 600 54.7
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.7e-154 549.7 621 53.1
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 3.6e-154 549.3 585 54.0
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.6e-154 549.3 548 54.4
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 6.1e-154 548.5 516 57.8
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 5.7e-152 542.0 598 52.2
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.4e-150 536.6 480 60.8
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 3.1e-150 536.2 552 56.0
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 5.3e-150 535.4 578 54.3
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.5e-147 527.3 543 55.8
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.1e-146 523.5 559 53.7
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 2.7e-146 523.1 528 54.5
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 6.1e-146 521.9 542 56.6
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 6.8e-145 518.5 570 55.1
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 6.8e-145 518.5 638 47.3
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.2e-144 517.7 630 47.9
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 8.3e-143 511.5 491 57.6
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 4.1e-142 509.2 540 52.4
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 9.1e-142 508.1 475 60.2
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.7e-140 503.8 542 52.4
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 1.5e-139 500.7 565 50.3
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.8e-132 476.1 572 50.3
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.1e-130 468.8 552 50.5
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 1.8e-126 457.2 572 49.5
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.6e-124 448.7 593 47.0
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.2e-117 427.9 564 45.9
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.9e-115 420.6 550 45.8
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 9.9e-112 408.3 361 65.7
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.0e-108 398.3 417 54.0
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 6.6e-100 369.0 375 57.3
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 7.1e-94 349.0 314 60.2
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 2.7e-93 347.1 645 36.7
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 5.6e-83 312.8 316 56.6
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 1.2e-77 295.0 281 56.9
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 4.3e-75 286.6 371 46.6
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.3e-58 231.9 163 71.2
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 4.8e-50 203.4 252 49.2
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 3.4e-48 197.2 246 46.3
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 6.1e-45 186.4 227 50.2
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.5e-35 155.2 285 34.7
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 7.5e-35 152.9 141 59.6
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.9e-30 138.3 167 50.9
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 4.0e-28 130.6 443 25.3
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 9.8e-27 125.9 515 24.5
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 2.6e-19 101.3 81 55.6
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.3e-18 99.0 94 47.9
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 2.4e-17 94.7 67 58.2
BcaB01g00170 Brassica carinata HOM05D002220 ORTHO05D008182 5.9e-16 90.1 91 56.0
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.7e-15 88.6 72 59.7
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.4e-12 79.0 195 35.9
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.8e-12 78.6 62 61.3
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 2.3e-12 78.2 66 62.1
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 3.0e-12 77.8 83 50.6
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.5e-11 75.5 100 43.0
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 6.4e-10 70.1 104 41.3
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 1.9e-09 68.6 103 39.8
FAN27G1770 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.3e-06 56.6 390 24.6


User provided reference genes

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