Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 2.9e-51 204.9 100 100.0
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 2.9e-51 204.9 100 100.0
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 1.4e-50 202.6 98 100.0
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 4.6e-49 197.6 100 98.0
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 4.6e-49 197.6 100 98.0
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 3.3e-47 191.4 95 97.9
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 1.6e-46 189.1 100 94.0
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 1.4e-45 186.0 102 92.2
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 3.4e-44 181.4 103 87.4
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 3.4e-44 181.4 102 88.2
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 2.2e-43 178.7 102 88.2
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 4.9e-43 177.6 102 87.3
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 1.4e-42 176.0 100 86.0
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 3.5e-41 171.4 96 85.4
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 3.8e-35 151.4 94 76.6
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 4.9e-35 151.0 96 75.0
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 6.4e-35 150.6 95 76.8
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 6.4e-35 150.6 94 77.7
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 1.9e-34 149.1 94 76.6
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 1.9e-34 149.1 93 78.5
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 1.9e-34 149.1 94 76.6
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 3.2e-34 148.3 96 77.1
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 7.1e-34 147.1 94 76.6
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 7.1e-34 147.1 94 76.6
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 7.1e-34 147.1 94 75.5
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 9.2e-34 146.7 94 76.6
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 1.6e-33 146.0 94 73.4
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 2.1e-33 145.6 94 75.5
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 1.7e-32 142.5 94 74.5
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 2.3e-32 142.1 94 73.4
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 3.9e-32 141.4 94 75.5
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 8.7e-32 140.2 95 70.5
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 8.7e-32 140.2 94 73.4
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 1.1e-31 139.8 94 72.3
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 1.1e-31 139.8 95 70.5
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 1.1e-31 139.8 95 70.5
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 3.3e-31 138.3 93 71.0
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 4.3e-31 137.9 94 70.2
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 7.3e-31 137.1 93 74.2
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 1.3e-30 136.3 94 72.3
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.3e-30 136.3 95 68.4
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.6e-30 136.0 93 69.9
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 2.1e-30 135.6 94 67.0
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 3.6e-30 134.8 92 69.6
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 8.1e-30 133.7 93 67.7
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.1e-29 133.3 94 73.4
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 1.1e-29 133.3 94 70.2
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 1.1e-29 133.3 95 67.4
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 1.4e-29 132.9 92 68.5
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 3.1e-29 131.7 93 66.7
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 3.1e-29 131.7 93 66.7
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 9.0e-29 130.2 97 68.0
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 9.0e-29 130.2 87 67.8
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 1.5e-28 129.4 95 68.4
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.5e-28 129.4 95 62.1
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.6e-28 128.6 95 67.4
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.6e-28 128.6 95 67.4
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.6e-28 128.6 95 67.4
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 3.4e-28 128.3 94 71.3
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 5.8e-28 127.5 70 82.9
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 7.6e-28 127.1 143 50.3
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 9.9e-28 126.7 93 68.8
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 2.2e-27 125.6 98 62.2
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 1.1e-26 123.2 93 64.5
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 1.9e-26 122.5 96 62.5
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 1.9e-26 122.5 93 65.6
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 2.4e-26 122.1 96 63.5
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 4.2e-26 121.3 135 52.6
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 5.4e-26 120.9 93 63.4
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.2e-25 119.8 95 65.3
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 1.2e-25 119.8 70 80.0
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 1.6e-25 119.4 91 64.8
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 2.1e-25 119.0 97 63.9
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 2.7e-25 118.6 88 64.8
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 7.8e-25 117.1 96 61.5
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 1.3e-24 116.3 96 63.5
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 1.3e-24 116.3 93 60.2
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 8.7e-24 113.6 97 61.9
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 8.7e-24 113.6 93 59.1
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 8.7e-24 113.6 81 67.9
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 2.5e-23 112.1 90 61.1
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 7.3e-23 110.5 84 60.7
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 2.8e-22 108.6 88 63.6
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 4.8e-22 107.8 95 60.0
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 6.2e-22 107.5 165 44.8
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-21 106.7 86 64.0
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 3.1e-21 105.1 104 53.8
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 5.8e-20 100.9 88 60.2
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 6.4e-19 97.4 89 60.7
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 4.2e-18 94.7 64 70.3
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.5e-17 91.7 53 81.1
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 3.5e-17 91.7 66 62.1
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 1.0e-16 90.1 99 52.5
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 1.0e-16 90.1 49 83.7
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 1.8e-16 89.4 94 54.3
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.3e-16 89.0 69 63.8
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 3.3e-15 85.1 66 66.7
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 4.3e-15 84.7 49 79.6
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 6.2e-14 80.9 71 59.2
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 6.2e-14 80.9 66 60.6
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 2.4e-13 79.0 49 67.3
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 6.9e-13 77.4 65 64.6
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 1.0e-08 63.5 46 67.4
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 4.3e-07 58.2 45 62.2


User provided reference genes

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