Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08744 Brassica carinata HOM05D000249 ORTHO05D090709 5.3e-209 730.7 354 100.0
BcaC02g08743 Brassica carinata HOM05D000249 ORTHO05D027180 9.4e-73 278.1 347 48.4
A04p16580 Brassica napus HOM05D000249 ORTHO05D027180 6.3e-69 265.4 344 48.3
BraA04t17293Z Brassica rapa HOM05D000249 ORTHO05D027180 6.3e-69 265.4 344 48.3
BcaB06g27802 Brassica carinata HOM05D000249 ORTHO05D027180 6.5e-66 255.4 330 47.9
BcaB01g00672 Brassica carinata HOM05D000249 ORTHO05D000206 1.5e-41 174.5 266 39.8
BcaB01g00667 Brassica carinata HOM05D000249 ORTHO05D014430 1.8e-39 167.5 266 39.5
A09p42950 Brassica napus HOM05D000249 ORTHO05D000206 4.4e-38 162.9 265 37.7
BcaB01g00661 Brassica carinata HOM05D000249 ORTHO05D000206 9.8e-38 161.8 276 39.9
C08p24840 Brassica napus HOM05D000249 ORTHO05D000206 9.8e-38 161.8 272 38.2
BraA07t30572Z Brassica rapa HOM05D000249 ORTHO05D000206 2.2e-37 160.6 268 39.6
A07p29340 Brassica napus HOM05D000249 ORTHO05D000206 3.7e-37 159.8 268 39.2
BolC8t50100H Brassica oleracea HOM05D000249 ORTHO05D000206 3.7e-37 159.8 272 37.5
A09p42980 Brassica napus HOM05D000249 ORTHO05D000206 1.1e-36 158.3 272 38.6
BraA09t39766Z Brassica rapa HOM05D000249 ORTHO05D000206 1.1e-36 158.3 272 38.6
BcaB01g00662 Brassica carinata HOM05D000249 ORTHO05D000206 7.0e-36 155.6 271 36.9
BcaB01g00669 Brassica carinata HOM05D000249 ORTHO05D000206 9.2e-36 155.2 264 39.4
BcaB01g00670 Brassica carinata HOM05D000249 ORTHO05D000206 1.2e-35 154.8 267 37.5
BcaB01g00671 Brassica carinata HOM05D000249 ORTHO05D000206 2.1e-35 154.1 260 37.7
A09p42960 Brassica napus HOM05D000249 ORTHO05D000206 2.7e-35 153.7 272 37.9
BraA09t39764Z Brassica rapa HOM05D000249 ORTHO05D000206 2.7e-35 153.7 272 37.9
BolC6t40027H Brassica oleracea HOM05D000249 ORTHO05D000206 1.5e-33 147.9 266 37.2
BcaC08g47310 Brassica carinata HOM05D000249 ORTHO05D000206 5.6e-33 146.0 266 37.2
A09p48400 Brassica napus HOM05D000249 ORTHO05D000206 8.1e-32 142.1 273 36.3
BraA09t40292Z Brassica rapa HOM05D000249 ORTHO05D000206 8.1e-32 142.1 273 36.3
BcaC07g39864 Brassica carinata HOM05D000249 ORTHO05D000206 1.1e-31 141.7 272 36.8
C08p30700 Brassica napus HOM05D000249 ORTHO05D000206 1.1e-31 141.7 272 37.5
BolC8t50686H Brassica oleracea HOM05D000249 ORTHO05D000206 1.8e-31 141.0 272 37.5
BcaB01g00668 Brassica carinata HOM05D000249 ORTHO05D000206 5.2e-31 139.4 266 33.8
A09p43010 Brassica napus HOM05D000249 ORTHO05D000206 2.0e-30 137.5 191 43.5
BraA09t39768Z Brassica rapa HOM05D000249 ORTHO05D000206 2.0e-30 137.5 191 43.5
BraA09t39763Z Brassica rapa HOM05D000249 ORTHO05D000206 3.4e-30 136.7 253 34.8
BolC4t26943H Brassica oleracea HOM05D000249 ORTHO05D019890 9.9e-30 135.2 269 36.8
BcaC02g08476 Brassica carinata HOM05D000249 ORTHO05D019890 1.7e-29 134.4 269 36.8
C08p24860 Brassica napus HOM05D000249 ORTHO05D027859 2.7e-27 127.1 225 37.3
AL4G39390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 6.0e-27 125.9 266 36.8
BolC5t33246H Brassica oleracea HOM05D000249 ORTHO05D024239 1.3e-26 124.8 259 35.1
AT2G41360 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.3e-26 124.0 265 35.8
A05p29990 Brassica napus HOM05D000249 ORTHO05D018661 8.6e-26 122.1 243 35.8
BraA05t21843Z Brassica rapa HOM05D000249 ORTHO05D018661 8.6e-26 122.1 243 35.8
C05p45250 Brassica napus HOM05D000249 ORTHO05D024239 1.1e-25 121.7 259 34.7
C04p53950 Brassica napus HOM05D000088 ORTHO05D002762 2.5e-25 120.6 242 36.4
BcaC02g08473 Brassica carinata HOM05D000249 ORTHO05D019890 2.1e-24 117.5 242 36.0
BolC4t26944H Brassica oleracea HOM05D000249 ORTHO05D019890 2.8e-24 117.1 242 36.0
BcaB06g26029 Brassica carinata HOM05D000249 ORTHO05D000206 3.6e-24 116.7 172 44.2
BcaB04g20311 Brassica carinata HOM05D000249 ORTHO05D015951 5.2e-23 112.8 261 31.4
Carub.0004s0120 Capsella rubella HOM05D000249 ORTHO05D000206 6.8e-23 112.5 239 33.9
A09p42970 Brassica napus HOM05D000249 ORTHO05D014430 1.2e-22 111.7 170 39.4
BcaC07g39448 Brassica carinata HOM05D000249 ORTHO05D000206 1.5e-22 111.3 154 44.2
CARHR113180 Cardamine hirsuta HOM05D000249 ORTHO05D015951 2.6e-22 110.5 272 31.2
BraA09t39765Z Brassica rapa HOM05D000249 ORTHO05D014430 1.7e-21 107.8 168 39.3
BraA09t40943Z Brassica rapa HOM05D000249 ORTHO05D015951 2.2e-21 107.5 261 33.3
BraA04t17474Z Brassica rapa HOM05D000249 ORTHO05D019890 3.8e-21 106.7 167 43.1
A09p55410 Brassica napus HOM05D000249 ORTHO05D015951 3.2e-20 103.6 261 32.6
BcaC07g40841 Brassica carinata HOM05D000249 ORTHO05D015951 9.2e-20 102.1 184 38.6
BolC8t51411H Brassica oleracea HOM05D000249 ORTHO05D015951 9.2e-20 102.1 184 38.6
BcaC04g24035 Brassica carinata HOM05D000249 ORTHO05D018661 2.7e-19 100.5 224 34.4
C08p38380 Brassica napus HOM05D000249 ORTHO05D015951 2.7e-19 100.5 184 38.6
BcaC05g28442 Brassica carinata HOM05D000249 ORTHO05D024239 1.0e-18 98.6 259 31.7
C06p49890 Brassica napus HOM05D000249 ORTHO05D000206 1.0e-18 98.6 163 42.9
BcaB01g00663 Brassica carinata HOM05D000249 ORTHO05D014430 1.7e-18 97.8 165 35.2
BcaC05g29394 Brassica carinata HOM05D000249 ORTHO05D018661 1.7e-18 97.8 250 32.8
AL4G11360 Arabidopsis lyrata HOM05D000249 ORTHO05D015951 4.7e-16 89.7 197 37.6
A05p29970 Brassica napus HOM05D000249 ORTHO05D024239 4.7e-16 89.7 190 37.4
BraA05t21842Z Brassica rapa HOM05D000249 ORTHO05D024239 4.7e-16 89.7 190 37.4
Carub.0005s2732 Capsella rubella HOM05D000249 ORTHO05D000206 6.2e-16 89.4 241 31.5
Carub.0005s2749 Capsella rubella HOM05D000249 ORTHO05D000206 1.1e-15 88.6 242 29.8
Thhalv10000440m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 4.0e-15 86.7 268 26.1
Carub.0004s0116 Capsella rubella HOM05D000249 ORTHO05D000206 9.0e-15 85.5 259 30.1
C08p24830 Brassica napus HOM05D000249 ORTHO05D000206 7.6e-14 82.4 128 39.1
BcaC07g39445 Brassica carinata HOM05D000249 ORTHO05D014430 1.3e-13 81.6 142 33.8
CARHR113160 Cardamine hirsuta HOM05D000249 ORTHO05D000206 2.9e-13 80.5 255 29.0
Thhalv10000680m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.9e-13 80.5 241 28.2
BcaC08g47315 Brassica carinata HOM05D000249 ORTHO05D000206 4.9e-13 79.7 231 29.4
A09p42990 Brassica napus HOM05D000249 ORTHO05D014430 6.4e-13 79.3 140 36.4
BcaC08g47314 Brassica carinata HOM05D000249 ORTHO05D000206 8.4e-13 79.0 140 38.6
BcaB08g35219 Brassica carinata HOM05D000249 ORTHO05D015951 1.4e-12 78.2 248 32.3
Thhalv10018745m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.9e-12 77.8 152 33.6
A04p19790 Brassica napus HOM05D000249 ORTHO05D000206 2.4e-12 77.4 165 30.3
A08p17670 Brassica napus HOM05D000249 ORTHO05D027792 2.4e-12 77.4 211 28.9
BcaC02g08340 Brassica carinata HOM05D000249 ORTHO05D000206 4.2e-12 76.6 165 30.3
C04p55530 Brassica napus HOM05D000249 ORTHO05D000206 4.2e-12 76.6 165 30.3
BolC4t27078H Brassica oleracea HOM05D000249 ORTHO05D000206 4.2e-12 76.6 165 30.3
CARHR139910 Cardamine hirsuta HOM05D000249 ORTHO05D000206 5.4e-12 76.3 243 28.0
C05p56810 Brassica napus HOM05D000249 ORTHO05D018661 7.1e-12 75.9 238 31.5
Thhalv10022208m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 7.1e-12 75.9 176 31.8
BcaC04g24138 Brassica carinata HOM05D000249 ORTHO05D000206 9.3e-12 75.5 164 33.5
C09p00690 Brassica napus HOM05D000249 ORTHO05D000206 9.3e-12 75.5 164 33.5
BolC9t53003H Brassica oleracea HOM05D000249 ORTHO05D000206 9.3e-12 75.5 164 33.5
AT2G22030 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.2e-11 75.1 262 26.0
C05p45260 Brassica napus HOM05D000249 ORTHO05D042351 1.2e-11 75.1 121 40.5
C08p41400 Brassica napus HOM05D000249 ORTHO05D000206 1.2e-11 75.1 168 31.5
BolC5t33247H Brassica oleracea HOM05D000249 ORTHO05D042351 1.2e-11 75.1 121 40.5
BraA04t17569Z Brassica rapa HOM05D000249 ORTHO05D000206 1.2e-11 75.1 162 32.7
BolC5t34347H Brassica oleracea HOM05D000249 ORTHO05D018661 1.6e-11 74.7 238 31.1
BcaB06g28077 Brassica carinata HOM05D000249 ORTHO05D000206 2.1e-11 74.3 167 32.3
A04p19810 Brassica napus HOM05D000249 ORTHO05D000206 2.1e-11 74.3 158 32.9
BolC8t51670H Brassica oleracea HOM05D000249 ORTHO05D000206 2.1e-11 74.3 167 30.5
Carub.0005s1140 Capsella rubella HOM05D000249 ORTHO05D000206 2.1e-11 74.3 188 28.7
Thhalv10000554m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.1e-11 74.3 257 25.3
BolC8t50099H Brassica oleracea HOM05D000249 ORTHO05D014430 2.7e-11 73.9 105 46.7
Sp4g05040 Schrenkiella parvula HOM05D000249 ORTHO05D000206 3.5e-11 73.6 192 28.6
AT2G44630 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 6.0e-11 72.8 182 30.2
A04p18630 Brassica napus HOM05D000249 ORTHO05D014430 6.0e-11 72.8 56 58.9
C06p26900 Brassica napus HOM05D000249 ORTHO05D000206 6.0e-11 72.8 164 32.3
BolC6t37864H Brassica oleracea HOM05D000249 ORTHO05D000206 6.0e-11 72.8 164 32.3
CARHR167680 Cardamine hirsuta HOM05D000249 ORTHO05D000206 6.0e-11 72.8 167 31.1
AT5G39560 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 7.8e-11 72.4 230 27.4
C08p41060 Brassica napus HOM05D000249 ORTHO05D000206 7.8e-11 72.4 167 30.5
BraA09t41175Z Brassica rapa HOM05D000249 ORTHO05D000206 1.3e-10 71.6 165 30.3
Thhalv10006383m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.3e-10 71.6 192 30.2
AT2G22050 Arabidopsis thaliana HOM05D000249 ORTHO05D015951 1.7e-10 71.2 118 39.0
AL4G11340 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.3e-10 70.9 177 32.2
BcaC02g08338 Brassica carinata HOM05D000249 ORTHO05D000206 2.3e-10 70.9 180 28.3
BolC4t27079H Brassica oleracea HOM05D000249 ORTHO05D000206 2.3e-10 70.9 180 28.3
Thhalv10000664m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.3e-10 70.9 168 33.9
BcaC07g41102 Brassica carinata HOM05D000249 ORTHO05D000206 3.0e-10 70.5 167 29.9
C04p55550 Brassica napus HOM05D000249 ORTHO05D000206 3.0e-10 70.5 180 28.9
C08p41040 Brassica napus HOM05D000249 ORTHO05D000206 3.0e-10 70.5 166 28.3
A09p58140 Brassica napus HOM05D000249 ORTHO05D000206 3.9e-10 70.1 182 28.0
AT2G44700 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 5.1e-10 69.7 240 26.7
BcaB01g00664 Brassica carinata HOM05D003412 ORTHO05D014430 5.1e-10 69.7 119 36.1
BcaB06g28076 Brassica carinata HOM05D000249 ORTHO05D000206 5.1e-10 69.7 165 29.1
BcaB08g35030 Brassica carinata HOM05D000249 ORTHO05D000206 6.6e-10 69.3 166 27.7
BcaC07g41099 Brassica carinata HOM05D000249 ORTHO05D000206 6.6e-10 69.3 166 27.7
BcaC07g41103 Brassica carinata HOM05D000249 ORTHO05D000206 6.6e-10 69.3 166 27.7
BolC8t51668H Brassica oleracea HOM05D000249 ORTHO05D000206 6.6e-10 69.3 166 27.7
CARHR139920 Cardamine hirsuta HOM05D000249 ORTHO05D000206 6.6e-10 69.3 165 32.1
Carub.0004s2725 Capsella rubella HOM05D000249 ORTHO05D000206 8.7e-10 68.9 168 31.0
Carub.0004s2726 Capsella rubella HOM05D000249 ORTHO05D000206 8.7e-10 68.9 181 31.5
BraA09t41202Z Brassica rapa HOM05D000249 ORTHO05D000206 1.1e-09 68.6 169 29.0
BcaB01g02288 Brassica carinata HOM05D000249 ORTHO05D000206 1.5e-09 68.2 164 29.3
BcaB08g35031 Brassica carinata HOM05D000249 ORTHO05D000206 1.5e-09 68.2 167 26.9
A04p19800 Brassica napus HOM05D000249 ORTHO05D000206 1.5e-09 68.2 160 30.0
A09p57810 Brassica napus HOM05D000249 ORTHO05D000206 1.5e-09 68.2 178 25.8
BraA09t35738Z Brassica rapa HOM05D000249 ORTHO05D000206 1.5e-09 68.2 164 31.7
BraA09t41174Z Brassica rapa HOM05D000249 ORTHO05D000206 1.5e-09 68.2 178 25.8
BcaB01g02287 Brassica carinata HOM05D000249 ORTHO05D000206 1.9e-09 67.8 165 30.9
A04p18640 Brassica napus HOM05D000249 ORTHO05D019890 1.9e-09 67.8 64 56.2
Sp2g03450 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.9e-09 67.8 173 30.6
A09p57820 Brassica napus HOM05D000249 ORTHO05D000206 2.5e-09 67.4 167 29.3
BolC8t50102H Brassica oleracea HOM05D000249 ORTHO05D027859 4.3e-09 66.6 125 38.4
BcaC02g08475 Brassica carinata HOM05D000249 ORTHO05D019890 5.6e-09 66.2 137 36.5
AT4G02310 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 9.6e-09 65.5 168 29.2
A06p48420 Brassica napus HOM05D000249 ORTHO05D000206 9.6e-09 65.5 220 25.5
BraA06t27710Z Brassica rapa HOM05D000249 ORTHO05D000206 9.6e-09 65.5 220 25.5
A08p06700 Brassica napus HOM05D000249 ORTHO05D000206 2.1e-08 64.3 177 27.1
Thhalv10028720m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.8e-08 63.9 192 31.8
Sp4g05060 Schrenkiella parvula HOM05D000249 ORTHO05D000206 2.8e-08 63.9 181 30.4
Carub.0004s0117 Capsella rubella HOM05D000249 ORTHO05D000206 3.6e-08 63.5 212 26.4
Thhalv10000431m.g Eutrema salsugineum HOM05D000249 ORTHO05D014430 4.8e-08 63.2 97 37.1
BcaB01g00660 Brassica carinata HOM05D000249 ORTHO05D000206 6.2e-08 62.8 61 52.5
BraA08t32686Z Brassica rapa HOM05D000249 ORTHO05D000206 6.2e-08 62.8 177 26.6
Carub.0002s2327 Capsella rubella HOM05D000249 ORTHO05D000206 6.2e-08 62.8 146 31.5
Thhalv10029230m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 6.2e-08 62.8 169 32.5
BcaNung00278 Brassica carinata HOM05D000249 ORTHO05D000206 8.1e-08 62.4 230 28.3
A03p29570 Brassica napus HOM05D000249 ORTHO05D000206 8.1e-08 62.4 207 30.0
CARHR221070 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.4e-07 61.6 146 30.8
Thhalv10002193m.g Eutrema salsugineum HOM05D000249 ORTHO05D015951 1.4e-07 61.6 119 37.8
Thhalv10005584m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.8e-07 61.2 209 28.7
AT5G38680 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.4e-07 60.8 177 27.1
A09p00080 Brassica napus HOM05D000249 ORTHO05D000206 2.4e-07 60.8 148 31.8
AL7G34820 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.1e-07 60.5 168 29.8
BraA03t12151Z Brassica rapa HOM05D000249 ORTHO05D000206 3.1e-07 60.5 206 29.6
Carub.0007s3640 Capsella rubella HOM05D000249 ORTHO05D000206 3.1e-07 60.5 164 29.9
Sp4g05020 Schrenkiella parvula HOM05D000249 ORTHO05D000206 3.1e-07 60.5 95 42.1
C07p28460 Brassica napus HOM05D000249 ORTHO05D000206 4.0e-07 60.1 207 30.9
BolC7t43386H Brassica oleracea HOM05D000249 ORTHO05D000206 4.0e-07 60.1 207 30.9
BolC1t00972H Brassica oleracea HOM05D000249 ORTHO05D000206 5.3e-07 59.7 156 34.0
Carub.0007s3641 Capsella rubella HOM05D000249 ORTHO05D000206 5.3e-07 59.7 165 30.9
Thhalv10019473m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 5.3e-07 59.7 178 28.1
C03p05150 Brassica napus HOM05D000249 ORTHO05D000206 6.9e-07 59.3 147 27.9
C03p05260 Brassica napus HOM05D000249 ORTHO05D000206 6.9e-07 59.3 147 27.9
AT4G19330 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 9.0e-07 58.9 163 30.7
BcaB01g02080 Brassica carinata HOM05D000249 ORTHO05D018661 1.2e-06 58.5 61 54.1
BcaC06g34437 Brassica carinata HOM05D000249 ORTHO05D000206 1.2e-06 58.5 207 30.4
A01p08670 Brassica napus HOM05D000249 ORTHO05D000206 1.2e-06 58.5 150 30.7
Carub.0008s0881 Capsella rubella HOM05D000249 ORTHO05D000206 1.2e-06 58.5 160 28.8
CARHR096590 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.2e-06 58.5 67 50.7
A09p43000 Brassica napus HOM05D000249 ORTHO05D027859 1.5e-06 58.2 47 63.8
AL7G50760 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.0e-06 57.8 169 27.8
Thhalv10000678m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 3.4e-06 57.0 180 30.0
AL7G23060 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 4.5e-06 56.6 174 31.0
BcaNung00910 Brassica carinata HOM05D000249 ORTHO05D000206 5.8e-06 56.2 147 27.2
C01p00900 Brassica napus HOM05D000249 ORTHO05D000206 5.8e-06 56.2 147 27.2
BolC1t00091H Brassica oleracea HOM05D000249 ORTHO05D000206 5.8e-06 56.2 147 27.2
AL2G16030 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 9.9e-06 55.5 167 24.6
BcaB05g21940 Brassica carinata HOM05D000249 ORTHO05D000206 9.9e-06 55.5 162 27.2
Thhalv10026752m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 9.9e-06 55.5 169 27.8


User provided reference genes

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