Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 3.9e-147 525.0 313 100.0
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 6.7e-139 497.7 343 83.1
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 2.2e-129 466.1 274 94.2
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 4.0e-91 339.0 235 84.3
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 4.0e-91 339.0 235 84.3
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 3.4e-90 335.9 235 83.8
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 3.4e-90 335.9 235 83.8
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 6.3e-89 331.6 235 83.4
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 5.4e-88 328.6 211 90.0
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 4.4e-82 308.9 212 81.1
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 3.7e-81 305.8 211 80.1
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 1.1e-80 304.3 212 81.1
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 2.4e-80 303.1 212 80.7
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 4.1e-80 302.4 211 80.6
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 2.7e-79 299.7 212 78.3
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 1.0e-78 297.7 210 79.0
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 3.6e-76 289.3 214 76.6
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 6.8e-75 285.0 212 75.5
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 1.7e-73 280.4 212 74.5
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 8.3e-73 278.1 212 72.6
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 2.5e-69 266.5 212 73.1
C04p51610 Brassica napus HOM05D006409 ORTHO05D008250 8.3e-65 251.5 135 100.0
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 3.2e-56 223.0 207 63.3
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 1.4e-51 207.6 210 57.6
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 1.8e-51 207.2 227 55.9
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 5.8e-42 175.6 206 55.3
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 6.0e-31 139.0 85 94.1
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 7.9e-31 138.7 235 44.7
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 4.8e-28 129.4 233 42.9
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 8.2e-28 128.6 216 42.1
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 1.1e-27 128.3 216 41.7
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 1.1e-27 128.3 243 41.2
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 3.1e-27 126.7 234 41.0
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 2.0e-26 124.0 237 40.5
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 2.6e-26 123.6 233 41.2
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 5.8e-26 122.5 238 38.7
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 1.0e-25 121.7 234 39.7
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 1.3e-25 121.3 210 40.5
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 1.7e-25 120.9 233 37.8
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 3.8e-25 119.8 234 38.9
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 6.5e-25 119.0 231 39.0
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.9e-24 117.5 251 37.5
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 1.9e-24 117.5 213 39.9
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 1.9e-24 117.5 232 38.8
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 3.2e-24 116.7 233 39.1
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 7.1e-24 115.5 209 41.1
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 9.3e-24 115.2 213 39.4
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 1.6e-23 114.4 230 39.6
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 4.6e-23 112.8 228 39.0
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 6.1e-23 112.5 232 39.7
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 1.0e-22 111.7 235 39.1
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.0e-22 110.2 228 38.6
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 6.7e-22 109.0 211 40.3
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 1.1e-21 108.2 210 40.0
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 1.1e-21 108.2 233 36.5
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 1.5e-21 107.8 232 38.4
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 3.3e-21 106.7 234 35.9
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 5.7e-21 105.9 215 37.2
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 7.4e-21 105.5 224 36.6
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 7.4e-21 105.5 232 37.1
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 3.7e-20 103.2 171 41.5
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 1.4e-19 101.3 215 39.1
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 1.8e-19 100.9 232 37.1
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 2.4e-19 100.5 216 37.5
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 4.1e-19 99.8 184 38.0
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 1.2e-18 98.2 215 35.3
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 1.5e-18 97.8 216 37.5
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 1.5e-18 97.8 229 37.1
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 5.9e-18 95.9 209 36.8
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 7.7e-18 95.5 216 38.0
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 7.7e-18 95.5 229 36.7
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 7.7e-18 95.5 229 36.7
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 1.3e-17 94.7 180 38.3
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 1.3e-17 94.7 235 35.7
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 1.3e-17 94.7 230 35.7
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 1.7e-17 94.4 222 35.1
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 1.7e-17 94.4 228 36.0
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 2.2e-17 94.0 231 35.5
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 3.8e-17 93.2 151 40.4
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 3.8e-17 93.2 216 36.6
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 5.0e-17 92.8 229 35.8
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 8.5e-17 92.0 231 37.2
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 2.5e-16 90.5 153 41.2
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 3.2e-16 90.1 216 35.2
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 5.5e-16 89.4 194 36.6
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 5.5e-16 89.4 202 35.6
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 9.4e-16 88.6 217 34.1
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 6.1e-15 85.9 235 31.9
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 1.4e-14 84.7 210 31.9
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 2.3e-14 84.0 189 37.0
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 8.8e-14 82.0 213 35.7
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 8.8e-14 82.0 215 33.0
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 1.1e-13 81.6 205 32.7
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 9.7e-13 78.6 228 35.1
BcaC06g33174 Brassica carinata HOM05D001456 ORTHO05D014991 1.3e-12 78.2 197 36.0
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 1.3e-12 78.2 202 34.7
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 6.3e-12 75.9 219 34.2
Thhalv10003670m.g Eutrema salsugineum HOM05D001456 ORTHO05D014991 1.1e-11 75.1 118 41.5
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 1.4e-11 74.7 151 40.4
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 9.1e-11 72.0 117 41.0
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 1.5e-10 71.2 217 31.3
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 2.6e-10 70.5 132 39.4
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 5.9e-10 69.3 208 30.8
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 1.3e-09 68.2 146 36.3
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 6.5e-09 65.9 150 34.7
CARHR274940 Cardamine hirsuta HOM05D001456 ORTHO05D014991 8.5e-09 65.5 180 32.2
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 1.1e-08 65.1 118 39.8
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 1.1e-08 65.1 150 34.0
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 1.1e-08 65.1 157 34.4
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 1.4e-08 64.7 136 33.1
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 4.2e-08 63.2 99 43.4
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 2.7e-07 60.5 127 39.4
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 1.0e-06 58.5 172 34.3
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 1.0e-06 58.5 128 38.3
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 1.4e-06 58.2 142 35.2


User provided reference genes

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