Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 7.3e-171 604.0 343 100.0
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 1.2e-149 533.5 349 89.1
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 7.6e-136 487.6 343 83.1
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 3.4e-112 409.1 310 80.0
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 3.4e-112 409.1 310 80.0
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 8.4e-111 404.4 286 86.0
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 2.6e-104 382.9 311 79.1
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 2.6e-104 382.9 311 79.1
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 2.2e-103 379.8 291 79.4
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 7.4e-99 364.8 286 75.5
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 1.7e-98 363.6 288 75.0
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.4e-94 350.5 286 74.1
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 1.2e-93 347.4 285 75.1
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 6.7e-92 341.7 276 72.1
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 1.5e-91 340.5 285 75.8
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 7.4e-91 338.2 289 70.9
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 3.7e-90 335.9 265 75.1
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 2.4e-89 333.2 287 71.8
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 9.1e-89 331.3 287 73.2
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 1.9e-86 323.6 287 67.2
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 5.5e-86 322.0 287 68.6
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 4.0e-68 262.7 284 61.3
C04p51610 Brassica napus HOM05D006409 ORTHO05D008250 6.8e-68 261.9 156 92.9
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 5.4e-65 252.3 263 58.6
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 1.3e-58 231.1 291 55.3
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 3.1e-44 183.3 283 50.9
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 1.1e-38 164.9 302 42.7
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 4.7e-37 159.5 288 42.0
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 6.2e-37 159.1 300 42.7
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 8.1e-37 158.7 291 42.6
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 6.8e-36 155.6 288 45.5
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 9.9e-35 151.8 291 41.6
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 1.6e-32 144.4 288 41.0
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 2.1e-32 144.1 299 39.5
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 2.7e-32 143.7 263 42.6
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 3.5e-32 143.3 292 42.8
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 3.5e-32 143.3 301 42.2
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 1.0e-31 141.7 289 39.4
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 1.3e-31 141.4 268 40.7
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 1.3e-31 141.4 276 42.4
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 3.9e-31 139.8 85 95.3
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 5.1e-31 139.4 290 40.7
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 1.5e-30 137.9 306 41.2
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 7.3e-30 135.6 276 41.7
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 1.2e-29 134.8 291 39.9
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 1.6e-29 134.4 297 39.1
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 1.6e-29 134.4 275 40.4
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 1.6e-29 134.4 295 40.7
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 2.8e-29 133.7 268 38.8
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 4.7e-29 132.9 281 41.6
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 6.2e-29 132.5 268 40.7
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 8.1e-29 132.1 282 39.4
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 1.1e-28 131.7 302 39.1
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 1.8e-28 131.0 288 39.2
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 2.4e-28 130.6 301 40.2
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 3.1e-28 130.2 275 38.5
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 4.0e-28 129.8 274 39.8
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 8.9e-28 128.6 284 38.4
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.2e-27 128.3 323 38.7
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 1.2e-27 128.3 287 38.7
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 2.0e-27 127.5 264 40.9
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 2.6e-27 127.1 269 40.5
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 4.4e-27 126.3 300 40.7
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 5.8e-27 125.9 293 38.9
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 5.8e-27 125.9 256 40.2
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 7.6e-27 125.6 269 40.5
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 7.6e-27 125.6 260 39.6
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 9.9e-27 125.2 284 39.8
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 1.3e-26 124.8 292 37.7
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 1.7e-26 124.4 287 40.4
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 2.2e-26 124.0 280 39.3
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 8.4e-26 122.1 283 40.6
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 8.4e-26 122.1 300 39.7
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 8.4e-26 122.1 271 36.9
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 1.4e-25 121.3 286 38.8
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 2.4e-25 120.6 289 35.6
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 2.4e-25 120.6 287 39.7
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 3.2e-25 120.2 239 40.6
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 4.2e-25 119.8 282 35.5
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 5.4e-25 119.4 264 41.7
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 1.2e-24 118.2 263 36.9
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 3.5e-24 116.7 285 37.9
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 1.3e-23 114.8 260 38.5
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 6.6e-23 112.5 269 37.9
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 4.3e-22 109.8 242 39.3
C04p51600 Brassica napus HOM05D006409 ORTHO05D008250 7.3e-22 109.0 92 75.0
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 9.6e-22 108.6 234 37.2
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 2.1e-21 107.5 248 39.9
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 8.1e-21 105.5 264 39.0
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 3.1e-20 103.6 295 36.9
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 4.0e-20 103.2 171 42.1
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 6.9e-20 102.4 274 36.5
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 2.6e-19 100.5 274 36.5
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 2.6e-19 100.5 270 37.4
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 9.9e-19 98.6 264 37.5
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 2.2e-18 97.4 273 33.7
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 1.2e-16 91.7 221 37.1
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 7.9e-16 89.0 274 33.9
Migut.I00315 Erythranthe guttata HOM05D006409 ORTHO05D008250 1.0e-15 88.6 266 33.5
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 1.7e-15 87.8 275 36.4
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 6.6e-15 85.9 267 37.1
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 9.6e-14 82.0 294 31.0
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 2.8e-13 80.5 277 33.9
Os07g0598700 Oryza sativa ssp. japonica HOM05D006409 ORTHO05D008250 3.1e-12 77.0 282 29.1
Thhalv10003670m.g Eutrema salsugineum HOM05D001456 ORTHO05D014991 4.0e-12 76.6 118 43.2
Hund02605 Selenicereus undatus HOM05D006409 ORTHO05D008250 4.0e-12 76.6 234 34.2
BcaC06g33174 Brassica carinata HOM05D001456 ORTHO05D014991 5.3e-12 76.3 197 36.5
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 1.2e-11 75.1 151 41.1
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 2.0e-11 74.3 236 36.0
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 3.8e-10 70.1 268 29.1
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 1.1e-09 68.6 117 41.0
CARHR274940 Cardamine hirsuta HOM05D001456 ORTHO05D014991 4.2e-09 66.6 180 33.3
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.2e-08 65.1 132 38.6
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 7.9e-08 62.4 118 39.8
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 1.0e-07 62.0 99 43.4
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 3.0e-07 60.5 277 30.3
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 8.7e-07 58.9 127 39.4
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 1.9e-06 57.8 266 29.7
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 3.3e-06 57.0 128 38.3


User provided reference genes

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