Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08582 Brassica carinata HOM05D003546 ORTHO05D014122 9.0e-44 179.9 91 100.0
BcaC02g08580 Brassica carinata HOM05D003546 ORTHO05D014122 9.0e-36 153.3 75 100.0
C05p52660 Brassica napus HOM05D003546 ORTHO05D014122 4.5e-35 151.0 75 98.7
BolC4t26808H Brassica oleracea HOM05D003546 ORTHO05D014122 4.5e-35 151.0 75 98.7
BolC8t52242H Brassica oleracea HOM05D003546 ORTHO05D014122 4.2e-33 144.4 75 93.3
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 5.1e-31 137.5 75 92.0
BcaC03g14396 Brassica carinata HOM05D003546 ORTHO05D005667 1.7e-26 122.5 69 88.4
BraA01t02562Z Brassica rapa HOM05D003546 ORTHO05D014122 1.1e-25 119.8 69 88.4
BolC6t36430H Brassica oleracea HOM05D003546 ORTHO05D031910 2.5e-25 118.6 71 83.1
C04p52320 Brassica napus HOM05D003546 ORTHO05D014122 9.3e-25 116.7 63 92.1
A08p37500 Brassica napus HOM05D003546 ORTHO05D014122 2.1e-24 115.5 68 86.8
C06p12730 Brassica napus HOM05D003546 ORTHO05D031910 2.1e-24 115.5 71 81.7
C02p18050 Brassica napus HOM05D003546 ORTHO05D005667 9.7e-22 106.7 61 86.9
BcaC08g43888 Brassica carinata HOM05D003546 ORTHO05D031910 1.3e-21 106.3 63 84.1
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 1.6e-21 105.9 78 75.6
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 2.2e-21 105.5 78 74.4
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 3.7e-21 104.8 65 84.6
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 3.7e-21 104.8 65 83.1
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 3.7e-21 104.8 65 83.1
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 1.4e-20 102.8 65 81.5
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 2.4e-20 102.1 65 81.5
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 2.4e-20 102.1 78 74.4
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 3.1e-20 101.7 65 81.5
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 3.1e-20 101.7 65 81.5
BolC2t07938H Brassica oleracea HOM05D003546 ORTHO05D005667 5.3e-20 100.9 55 90.9
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 1.5e-19 99.4 65 80.0
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 2.6e-19 98.6 65 80.0
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 7.6e-19 97.1 65 78.5
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 1.0e-18 96.7 65 75.4
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 2.2e-18 95.5 90 56.7
C01p42230 Brassica napus HOM05D003546 ORTHO05D014122 8.5e-18 93.6 67 74.6
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 8.5e-18 93.6 65 72.3
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 8.5e-18 93.6 80 61.2
C02p16530 Brassica napus HOM05D003546 ORTHO05D005667 1.4e-17 92.8 62 80.6
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 1.4e-17 92.8 65 72.3
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 1.4e-17 92.8 65 72.3
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 4.2e-17 91.3 65 69.2
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 5.5e-17 90.9 84 56.0
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 5.5e-17 90.9 65 69.2
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 7.2e-17 90.5 65 70.8
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 9.3e-17 90.1 65 70.8
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 9.3e-17 90.1 65 72.3
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 1.2e-16 89.7 65 69.2
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 1.2e-16 89.7 90 53.3
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 2.1e-16 89.0 65 67.7
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 2.1e-16 89.0 65 70.8
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 2.7e-16 88.6 65 70.8
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 2.7e-16 88.6 89 53.9
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 2.7e-16 88.6 65 70.8
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 2.7e-16 88.6 65 70.8
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 3.6e-16 88.2 65 69.2
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 3.6e-16 88.2 65 66.2
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 3.6e-16 88.2 65 69.2
BolC2t07734H Brassica oleracea HOM05D003546 ORTHO05D005667 4.6e-16 87.8 73 69.9
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 4.6e-16 87.8 65 69.2
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 4.6e-16 87.8 65 69.2
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 4.6e-16 87.8 65 69.2
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 6.1e-16 87.4 65 66.2
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 6.1e-16 87.4 65 66.2
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 6.1e-16 87.4 65 66.2
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 6.1e-16 87.4 65 67.7
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 7.9e-16 87.0 65 64.6
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 7.9e-16 87.0 65 67.7
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 7.9e-16 87.0 65 69.2
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 7.9e-16 87.0 65 67.7
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 7.9e-16 87.0 80 58.8
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 7.9e-16 87.0 80 58.8
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 1.0e-15 86.7 65 67.7
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 1.0e-15 86.7 65 67.7
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 1.4e-15 86.3 65 66.2
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 1.4e-15 86.3 65 69.2
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.4e-15 86.3 65 66.2
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.4e-15 86.3 65 66.2
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 1.4e-15 86.3 65 66.2
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 1.4e-15 86.3 80 57.5
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 1.4e-15 86.3 65 67.7
C02p16330 Brassica napus HOM05D003546 ORTHO05D005667 1.8e-15 85.9 66 74.2
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 1.8e-15 85.9 65 67.7
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 1.8e-15 85.9 65 66.2
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 1.8e-15 85.9 65 66.2
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.8e-15 85.9 65 66.2
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 1.8e-15 85.9 65 66.2
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 2.3e-15 85.5 65 66.2
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 2.3e-15 85.5 65 66.2
BcaC03g14253 Brassica carinata HOM05D003546 ORTHO05D005667 3.0e-15 85.1 55 81.8
BcaC09g49138 Brassica carinata HOM05D003546 ORTHO05D014122 3.0e-15 85.1 60 71.7
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 3.9e-15 84.7 65 66.2
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 3.9e-15 84.7 65 64.6
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 3.9e-15 84.7 65 66.2
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 3.9e-15 84.7 65 67.7
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 5.1e-15 84.3 62 67.7
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 6.7e-15 84.0 65 64.6
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 6.7e-15 84.0 65 64.6
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 6.7e-15 84.0 65 64.6
BcaC01g00338 Brassica carinata HOM05D003546 ORTHO05D005667 6.7e-15 84.0 73 63.0
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 6.7e-15 84.0 65 64.6
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 1.1e-14 83.2 65 61.5
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.9e-14 82.4 65 63.1
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 1.9e-14 82.4 65 63.1
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 1.9e-14 82.4 65 63.1
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 3.3e-14 81.6 65 61.5
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 3.3e-14 81.6 57 68.4
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 3.3e-14 81.6 65 63.1
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 3.3e-14 81.6 65 63.1
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 4.3e-14 81.3 66 66.7
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 4.3e-14 81.3 74 62.2
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 4.3e-14 81.3 65 63.1
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 5.7e-14 80.9 65 64.6
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 7.4e-14 80.5 63 63.5
C03p78600 Brassica napus HOM05D003546 ORTHO05D005667 7.4e-14 80.5 75 62.7
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 7.4e-14 80.5 65 63.1
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 1.3e-13 79.7 65 61.5
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 1.3e-13 79.7 65 61.5
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 1.3e-13 79.7 55 72.7
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 1.3e-13 79.7 65 66.2
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 1.7e-13 79.3 65 63.1
BcaB01g00957 Brassica carinata HOM05D003546 ORTHO05D014122 2.2e-13 79.0 48 85.4
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 4.8e-13 77.8 55 67.3
A09p22480 Brassica napus HOM05D003546 ORTHO05D014122 6.3e-13 77.4 50 82.0
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 8.2e-13 77.0 55 69.1
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 8.2e-13 77.0 55 63.6
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 1.8e-12 75.9 65 58.5
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 3.1e-12 75.1 65 53.8
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 4.1e-12 74.7 65 56.9
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 4.1e-12 74.7 65 56.9
RcHm_v2.0_Chr5g0028931 Rosa chinensis HOM05D003546 ORTHO05D005667 9.1e-12 73.6 55 63.6
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 1.2e-11 73.2 65 58.5
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 1.2e-11 73.2 65 53.8
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 1.5e-11 72.8 65 53.8
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 2.0e-11 72.4 65 56.9
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 2.0e-11 72.4 65 58.5
A09p60550 Brassica napus HOM05D003546 ORTHO05D005667 5.9e-11 70.9 48 72.9
BraA09t41425Z Brassica rapa HOM05D003546 ORTHO05D005667 5.9e-11 70.9 48 72.9
C08p08990 Brassica napus HOM05D003546 ORTHO05D040745 1.7e-10 69.3 59 64.4
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 1.7e-10 69.3 65 50.8
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 1.7e-10 69.3 65 52.3
BolC8t47744H Brassica oleracea HOM05D003546 ORTHO05D040745 3.8e-10 68.2 48 75.0
Phvul.005G070200 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 4.2e-09 64.7 65 49.2
BcaB08g35084 Brassica carinata HOM05D003546 ORTHO05D005667 1.2e-08 63.2 39 87.2
GSVIVG01014076001 Vitis vinifera HOM05D003546 ORTHO05D005667 4.7e-08 61.2 45 64.4
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 7.9e-08 60.5 71 47.9
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 1.0e-07 60.1 65 49.2
Pp3c5_14610 Physcomitrium patens HOM05D000518 ORTHO05D005667 1.8e-07 59.3 71 46.5
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 2.3e-07 58.9 65 49.2
C03p54870 Brassica napus HOM05D003546 ORTHO05D005667 3.9e-07 58.2 34 79.4
Pp3c6_13210 Physcomitrium patens HOM05D003546 ORTHO05D005667 3.9e-07 58.2 71 46.5
A05p16200 Brassica napus HOM05D055649 ORTHO05D101691 5.1e-07 57.8 41 78.0
A09p25380 Brassica napus HOM05D055649 ORTHO05D097052 5.1e-07 57.8 41 78.0
AagrBONN_evm.TU.Sc2ySwM_344.5210 Anthoceros agrestis HOM05D003546 ORTHO05D005667 1.5e-06 56.2 65 47.7
Cc05_g10570 Coffea canephora HOM05D003546 ORTHO05D005667 2.0e-06 55.8 45 60.0
C01p09430 Brassica napus HOM05D063129 ORTHO05D041175 9.7e-06 53.5 34 82.4
BolC1t00931H Brassica oleracea HOM05D063129 ORTHO05D041175 9.7e-06 53.5 34 82.4


User provided reference genes

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