Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08580 Brassica carinata HOM05D003546 ORTHO05D014122 3.6e-114 414.8 199 100.0
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 6.5e-71 271.2 141 93.6
C05p52660 Brassica napus HOM05D003546 ORTHO05D014122 1.1e-70 270.4 215 68.4
BolC4t26808H Brassica oleracea HOM05D003546 ORTHO05D014122 8.7e-68 260.8 139 92.8
BolC8t52242H Brassica oleracea HOM05D003546 ORTHO05D014122 4.3e-67 258.5 213 67.1
A08p37500 Brassica napus HOM05D003546 ORTHO05D014122 2.9e-55 219.2 141 80.9
C04p52320 Brassica napus HOM05D003546 ORTHO05D014122 1.4e-54 216.9 111 95.5
BraA01t02562Z Brassica rapa HOM05D003546 ORTHO05D014122 7.2e-54 214.5 117 91.5
BcaC03g14396 Brassica carinata HOM05D003546 ORTHO05D005667 1.1e-41 174.1 94 89.4
C02p18050 Brassica napus HOM05D003546 ORTHO05D005667 8.0e-37 157.9 86 88.4
BcaC02g08582 Brassica carinata HOM05D003546 ORTHO05D014122 8.8e-36 154.5 75 100.0
BolC2t07938H Brassica oleracea HOM05D003546 ORTHO05D005667 4.4e-35 152.1 80 91.2
BolC6t36430H Brassica oleracea HOM05D003546 ORTHO05D031910 1.1e-25 120.9 112 60.7
C06p12730 Brassica napus HOM05D003546 ORTHO05D031910 9.2e-25 117.9 112 59.8
BcaB05g23518 Brassica carinata HOM05D003546 ORTHO05D014122 1.6e-24 117.1 82 75.6
BcaC08g43888 Brassica carinata HOM05D003546 ORTHO05D031910 9.5e-22 107.8 63 84.1
BcaB01g00957 Brassica carinata HOM05D003546 ORTHO05D014122 1.8e-20 103.6 86 65.1
C01p42230 Brassica napus HOM05D003546 ORTHO05D014122 8.9e-20 101.3 90 62.2
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 8.3e-18 94.7 68 75.0
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 8.3e-18 94.7 68 75.0
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 1.1e-17 94.4 68 73.5
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 1.8e-17 93.6 55 83.6
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 1.8e-17 93.6 55 83.6
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 3.2e-17 92.8 62 80.6
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 3.2e-17 92.8 55 83.6
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 5.4e-17 92.0 55 83.6
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 1.2e-16 90.9 55 81.8
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 1.6e-16 90.5 55 81.8
C02p16530 Brassica napus HOM05D003546 ORTHO05D005667 4.6e-16 89.0 88 59.1
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 7.8e-16 88.2 55 80.0
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 1.3e-15 87.4 55 80.0
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 1.7e-15 87.0 55 76.4
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 2.3e-15 86.7 54 77.8
BcaC09g49138 Brassica carinata HOM05D003546 ORTHO05D014122 3.0e-15 86.3 58 74.1
BcaC01g00338 Brassica carinata HOM05D003546 ORTHO05D005667 3.9e-15 85.9 64 67.2
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 3.9e-15 85.9 55 78.2
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 3.9e-15 85.9 55 74.5
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 6.6e-15 85.1 70 61.4
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 8.6e-15 84.7 99 51.5
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 1.1e-14 84.3 118 44.1
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 1.1e-14 84.3 101 49.5
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 1.1e-14 84.3 55 72.7
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.5e-14 84.0 86 52.3
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.5e-14 84.0 86 52.3
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 1.5e-14 84.0 86 52.3
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 1.9e-14 83.6 55 72.7
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 1.9e-14 83.6 86 57.0
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 3.3e-14 82.8 55 69.1
C03p78600 Brassica napus HOM05D003546 ORTHO05D005667 4.3e-14 82.4 66 66.7
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 4.3e-14 82.4 55 69.1
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 4.3e-14 82.4 55 72.7
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 4.3e-14 82.4 55 72.7
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 4.3e-14 82.4 99 50.5
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 5.6e-14 82.0 55 70.9
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 7.3e-14 81.6 55 70.9
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 7.3e-14 81.6 98 51.0
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 7.3e-14 81.6 55 69.1
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 7.3e-14 81.6 55 72.7
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 7.3e-14 81.6 55 72.7
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 9.5e-14 81.3 99 50.5
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 9.5e-14 81.3 55 72.7
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 9.5e-14 81.3 61 60.7
C04p41100 Brassica napus HOM05D003546 ORTHO05D014122 1.2e-13 80.9 44 88.6
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 1.2e-13 80.9 55 67.3
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 1.2e-13 80.9 55 72.7
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 1.2e-13 80.9 55 72.7
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 1.2e-13 80.9 55 67.3
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 1.2e-13 80.9 59 64.4
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 1.6e-13 80.5 55 70.9
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 1.6e-13 80.5 86 52.3
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 1.6e-13 80.5 56 67.9
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 1.6e-13 80.5 55 70.9
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 2.1e-13 80.1 86 52.3
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 2.1e-13 80.1 86 52.3
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 2.1e-13 80.1 55 67.3
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 2.1e-13 80.1 55 70.9
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 2.1e-13 80.1 99 49.5
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 2.1e-13 80.1 99 49.5
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 2.1e-13 80.1 99 49.5
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 2.1e-13 80.1 55 70.9
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 2.8e-13 79.7 55 70.9
BolC2t07734H Brassica oleracea HOM05D003546 ORTHO05D005667 2.8e-13 79.7 49 81.6
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 2.8e-13 79.7 55 70.9
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 3.6e-13 79.3 55 69.1
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 3.6e-13 79.3 55 69.1
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 3.6e-13 79.3 70 58.6
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 3.6e-13 79.3 70 58.6
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 4.7e-13 79.0 86 50.0
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 4.7e-13 79.0 55 65.5
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 4.7e-13 79.0 55 65.5
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 4.7e-13 79.0 55 65.5
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 4.7e-13 79.0 55 69.1
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 4.7e-13 79.0 55 67.3
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 4.7e-13 79.0 55 69.1
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 6.2e-13 78.6 55 69.1
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 6.2e-13 78.6 55 70.9
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 6.2e-13 78.6 70 57.1
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 6.2e-13 78.6 55 69.1
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 8.0e-13 78.2 55 69.1
A09p22480 Brassica napus HOM05D003546 ORTHO05D014122 8.0e-13 78.2 50 82.0
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 8.0e-13 78.2 55 67.3
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 8.0e-13 78.2 55 63.6
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 8.0e-13 78.2 99 48.5
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 8.0e-13 78.2 86 50.0
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 1.4e-12 77.4 55 67.3
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.4e-12 77.4 55 65.5
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 1.4e-12 77.4 55 65.5
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 1.4e-12 77.4 59 64.4
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 2.3e-12 76.6 55 65.5
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 3.1e-12 76.3 55 65.5
RcHm_v2.0_Chr5g0028931 Rosa chinensis HOM05D003546 ORTHO05D005667 3.1e-12 76.3 56 64.3
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 3.1e-12 76.3 101 46.5
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 4.0e-12 75.9 86 50.0
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 4.0e-12 75.9 87 54.0
C02p16330 Brassica napus HOM05D003546 ORTHO05D005667 5.2e-12 75.5 50 76.0
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 5.2e-12 75.5 86 51.2
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 1.2e-11 74.3 55 63.6
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 1.2e-11 74.3 54 66.7
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 2.0e-11 73.6 54 63.0
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 2.0e-11 73.6 99 46.5
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 2.6e-11 73.2 55 61.8
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 2.6e-11 73.2 53 66.0
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 5.8e-11 72.0 55 67.3
C08p08990 Brassica napus HOM05D003546 ORTHO05D040745 1.7e-10 70.5 59 64.4
BcaC03g14253 Brassica carinata HOM05D003546 ORTHO05D005667 2.2e-10 70.1 45 77.8
BolC8t47744H Brassica oleracea HOM05D003546 ORTHO05D040745 4.9e-10 68.9 48 75.0
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 6.4e-10 68.6 86 45.3
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 1.1e-09 67.8 55 54.5
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 1.1e-09 67.8 55 58.2
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 1.4e-09 67.4 86 45.3
BcaC02g08004 Brassica carinata HOM05D003546 ORTHO05D027045 1.9e-09 67.0 86 51.2
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 3.2e-09 66.2 59 54.2
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 4.1e-09 65.9 55 54.5
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 5.4e-09 65.5 55 54.5
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 5.4e-09 65.5 86 45.3
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 1.6e-08 63.9 55 56.4
A09p60550 Brassica napus HOM05D003546 ORTHO05D005667 2.0e-08 63.5 38 76.3
BraA09t41425Z Brassica rapa HOM05D003546 ORTHO05D005667 2.0e-08 63.5 38 76.3
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 6.0e-08 62.0 55 52.7
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 1.3e-07 60.8 55 49.1
C04p59530 Brassica napus HOM05D003546 ORTHO05D027045 3.0e-07 59.7 64 54.7
BolC4t27459H Brassica oleracea HOM05D003546 ORTHO05D027045 3.0e-07 59.7 64 54.7
A05p16200 Brassica napus HOM05D055649 ORTHO05D101691 8.6e-07 58.2 39 79.5
A09p25380 Brassica napus HOM05D055649 ORTHO05D097052 8.6e-07 58.2 39 79.5
C03p54870 Brassica napus HOM05D003546 ORTHO05D005667 8.6e-07 58.2 34 79.4
C07p60450 Brassica napus HOM05D003546 ORTHO05D027045 8.6e-07 58.2 64 51.6
Phvul.005G070200 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 1.1e-06 57.8 55 49.1
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 1.5e-06 57.4 62 48.4
BcaB01g02368 Brassica carinata HOM05D047160 ORTHO05D096100 5.6e-06 55.5 57 57.9
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 9.5e-06 54.7 56 48.2


User provided reference genes

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