Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.1e-264 916.0 444 100.0
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 6.2e-247 857.1 414 100.0
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.8e-246 855.5 414 99.8
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.2e-245 852.8 414 99.3
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 2.0e-245 852.0 414 99.3
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 6.8e-238 827.0 416 96.9
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 3.4e-229 798.1 411 93.4
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 9.6e-224 780.0 414 92.8
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 5.2e-222 774.2 410 90.5
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 2.0e-221 772.3 409 90.0
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 5.8e-221 770.8 442 86.0
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.1e-219 766.5 410 89.5
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 3.2e-219 765.0 412 89.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.9e-209 731.5 408 85.0
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 9.6e-208 726.9 411 84.9
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 5.3e-206 721.1 412 82.5
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 9.1e-182 640.6 407 74.2
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 9.4e-179 630.6 415 73.0
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.5e-176 623.2 408 71.6
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.5e-176 623.2 409 72.1
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.7e-176 621.3 407 72.2
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 9.7e-176 620.5 404 72.3
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 1.3e-175 620.2 407 71.5
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 1.3e-175 620.2 407 71.5
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.8e-175 619.0 401 72.8
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 2.8e-175 619.0 406 71.9
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 3.7e-175 618.6 399 72.2
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 2.0e-173 612.8 415 70.4
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.0e-172 610.5 403 73.0
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 5.0e-172 608.2 408 70.1
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 6.5e-172 607.8 408 70.1
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 6.5e-172 607.8 407 69.5
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 8.5e-172 607.4 415 70.1
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.9e-171 606.3 396 72.0
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.8e-169 599.7 403 71.2
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.3e-169 599.4 398 70.9
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.9e-169 598.6 398 70.9
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.1e-168 597.0 410 68.3
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 2.0e-168 596.3 401 69.8
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 3.3e-168 595.5 403 71.5
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 4.4e-168 595.1 398 70.4
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 1.7e-167 593.2 398 70.1
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.5e-165 585.1 403 68.5
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 2.2e-164 582.8 403 68.5
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 2.9e-164 582.4 402 67.9
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.1e-163 580.5 409 67.5
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.9e-163 579.7 406 67.2
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.5e-163 579.3 396 69.7
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.1e-162 576.2 408 67.2
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.0e-161 573.9 416 67.3
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.4e-161 573.5 394 68.0
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.8e-161 573.2 407 65.8
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 2.3e-161 572.8 408 66.7
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 4.0e-161 572.0 401 67.6
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 2.0e-160 569.7 410 68.0
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.6e-160 569.3 406 67.0
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 7.5e-160 567.8 403 66.5
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 9.7e-160 567.4 404 65.3
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 7.0e-158 561.2 410 66.8
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 7.7e-157 557.8 399 65.7
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 5.0e-156 555.1 407 65.1
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 5.0e-156 555.1 403 63.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 6.5e-156 554.7 404 65.8
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.5e-155 553.5 385 66.8
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.9e-155 553.1 397 66.5
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 9.4e-155 550.8 403 63.0
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 2.7e-154 549.3 388 65.7
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 2.7e-154 549.3 401 63.3
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.0e-153 547.4 393 67.2
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 2.3e-153 546.2 402 62.2
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.3e-153 546.2 406 63.5
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.4e-152 542.3 400 64.0
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 2.2e-151 539.7 403 61.3
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.2e-151 539.7 408 63.7
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 6.3e-151 538.1 409 62.1
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 3.1e-150 535.8 399 62.9
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.1e-150 535.4 418 62.2
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 5.4e-150 535.0 415 62.4
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 7.0e-150 534.6 403 61.8
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.2e-149 533.9 390 64.1
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 2.0e-149 533.1 406 61.3
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.5e-149 532.3 399 61.9
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 3.5e-149 532.3 396 64.1
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 3.5e-149 532.3 410 62.7
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 5.0e-148 528.5 396 61.4
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 5.0e-148 528.5 400 61.0
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 8.6e-148 527.7 409 60.4
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 8.6e-148 527.7 399 61.9
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 8.6e-148 527.7 392 63.8
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.1e-147 527.3 396 62.1
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.5e-147 526.9 397 61.7
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 7.2e-147 524.6 396 61.6
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 9.5e-147 524.2 396 61.4
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.2e-146 523.9 387 63.0
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.2e-146 523.9 387 63.0
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 2.1e-146 523.1 415 61.0
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 3.6e-146 522.3 389 60.9
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.0e-145 520.8 400 60.5
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 1.0e-145 520.8 400 62.2
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.4e-145 520.4 410 61.0
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.8e-145 520.0 397 61.7
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 5.2e-145 518.5 392 62.5
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 6.8e-145 518.1 388 63.1
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 3.4e-144 515.8 395 61.3
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 7.5e-144 514.6 386 62.2
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.7e-143 513.5 416 59.1
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.2e-143 513.1 379 62.8
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.2e-143 513.1 379 62.8
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 3.1e-142 509.2 396 60.1
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 4.1e-142 508.8 417 59.7
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.0e-141 506.5 406 63.1
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.1e-139 500.7 406 59.1
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.5e-139 500.4 385 61.6
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 4.3e-139 498.8 393 58.3
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 8.0e-138 494.6 398 59.5
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.7e-135 486.9 386 60.4
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 2.8e-130 469.5 392 56.1
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.8e-129 464.9 417 57.8
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.7e-127 459.1 407 56.5
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 4.9e-127 458.8 404 56.2
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 6.4e-127 458.4 403 55.3
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 4.6e-125 452.2 394 56.6
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 3.1e-121 439.5 411 52.1
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 7.8e-117 424.9 406 51.7
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.1e-116 422.2 382 55.8
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 5.1e-116 422.2 400 54.5
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.8e-113 413.7 404 53.2
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 8.7e-108 394.8 393 51.9
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 2.6e-104 383.3 405 47.9
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 8.4e-103 378.3 400 48.5
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 7.3e-99 365.2 406 46.3
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.6e-98 362.8 407 49.9
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.8e-97 360.5 406 47.8
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 1.1e-94 351.3 400 46.5
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.4e-89 333.6 407 45.2
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.1e-83 314.7 258 56.6
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.5e-83 314.3 407 45.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 7.1e-78 295.4 397 41.8
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 4.6e-77 292.7 399 42.1
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.0e-76 291.6 399 42.9
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 8.7e-76 288.5 407 43.7
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 7.2e-70 268.9 228 58.8
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-62 244.6 187 61.0
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.6e-61 241.1 157 70.1
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 1.2e-56 224.9 424 33.5
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 5.5e-38 162.9 154 53.9
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.2e-34 151.0 375 29.1
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 5.4e-33 146.4 115 61.7
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 1.9e-30 137.9 106 65.1
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 9.8e-27 125.6 81 71.6
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.2e-26 124.4 316 27.5
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 9.5e-22 109.0 409 26.4
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 2.2e-10 71.2 38 84.2
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 4.6e-08 63.5 49 59.2
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 6.0e-08 63.2 58 46.6


User provided reference genes

Program Settings