Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 1.5e-228 795.8 384 100.0
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 8.3e-224 780.0 414 92.8
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 8.3e-224 780.0 414 92.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 2.4e-223 778.5 414 92.5
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.6e-222 775.8 414 92.0
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 2.7e-222 775.0 414 92.0
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 4.9e-216 754.2 416 89.7
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 8.3e-208 726.9 411 86.6
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.3e-202 708.8 410 84.4
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 4.0e-202 708.0 409 84.1
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 3.4e-201 704.9 410 83.9
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 6.4e-200 700.7 414 82.9
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.9e-199 699.1 412 83.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 9.2e-191 670.2 406 79.6
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.7e-190 668.7 409 79.7
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 3.3e-188 661.8 412 77.4
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 6.4e-168 594.3 406 70.2
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 3.0e-165 585.5 407 69.3
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.7e-165 583.9 405 69.4
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.9e-164 582.8 402 69.4
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 5.6e-164 581.3 414 68.6
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 3.1e-162 575.5 405 68.4
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.6e-161 572.4 408 66.9
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 4.5e-161 571.6 406 67.0
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 4.5e-161 571.6 406 67.0
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 3.8e-160 568.5 400 68.2
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 4.2e-159 565.1 402 68.9
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.6e-158 563.1 399 67.4
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 2.1e-158 562.8 407 65.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 3.5e-158 562.0 414 65.9
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 7.9e-158 560.8 406 65.5
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.0e-157 560.5 412 66.0
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.0e-157 558.9 397 66.8
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.1e-157 558.1 397 66.8
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 6.7e-157 557.8 408 65.7
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.7e-156 554.7 397 66.2
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 5.7e-156 554.7 395 67.3
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 7.4e-156 554.3 402 67.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.1e-155 552.7 397 66.0
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 6.3e-155 551.2 402 67.4
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 3.1e-154 548.9 399 65.7
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 5.3e-154 548.1 409 63.8
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.7e-150 535.8 403 64.0
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 4.6e-150 535.0 408 63.7
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 6.1e-150 534.6 401 63.6
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 7.9e-150 534.3 395 65.6
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.0e-149 533.9 403 64.0
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 3.9e-149 531.9 405 63.5
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 3.3e-148 528.9 407 63.4
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 5.7e-148 528.1 393 63.6
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.2e-147 526.2 405 63.0
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 2.8e-147 525.8 416 63.5
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.8e-147 525.8 406 61.8
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 3.7e-147 525.4 409 64.1
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 4.8e-147 525.0 400 63.2
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.5e-145 520.0 407 62.4
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.4e-145 518.8 403 61.3
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.5e-145 518.5 403 62.0
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.1e-143 513.8 409 62.8
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.5e-143 512.7 396 62.1
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 4.6e-142 508.4 406 60.8
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 7.9e-142 507.7 396 62.6
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.0e-141 507.3 402 59.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.8e-141 506.5 404 62.4
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 5.1e-141 505.0 402 59.2
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.1e-140 503.8 385 62.1
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 1.5e-140 503.4 399 60.9
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.5e-140 503.4 406 59.6
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.5e-140 503.4 400 59.5
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.5e-140 502.7 407 60.9
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 3.3e-140 502.3 401 58.6
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 3.3e-140 502.3 384 62.0
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.7e-139 500.0 405 59.3
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 4.1e-138 495.4 409 59.9
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 2.0e-137 493.0 392 62.2
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 2.6e-137 492.7 401 57.6
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 5.9e-137 491.5 398 59.0
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.3e-136 490.3 387 60.7
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 3.8e-136 488.8 405 57.8
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 6.5e-136 488.0 395 60.5
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.4e-135 486.9 402 58.0
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.5e-135 486.1 398 58.3
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.2e-135 485.7 417 58.0
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 5.5e-135 485.0 409 58.7
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 7.2e-135 484.6 414 58.2
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.2e-134 483.8 399 57.4
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.2e-134 483.8 391 59.8
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.6e-134 483.4 398 58.0
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.0e-133 480.7 395 58.5
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.8e-133 479.9 394 57.6
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.3e-133 479.6 399 59.1
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.0e-133 479.2 396 57.8
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.1e-133 478.4 395 58.0
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.5e-132 476.9 408 56.1
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.0e-132 476.5 387 62.3
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.6e-132 476.1 383 59.3
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.6e-132 476.1 383 59.3
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 3.3e-132 475.7 394 57.6
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 2.2e-131 473.0 391 58.3
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 2.8e-131 472.6 398 56.3
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.7e-131 472.2 396 57.8
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 3.7e-131 472.2 386 56.7
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 4.8e-131 471.9 414 57.0
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 8.2e-131 471.1 385 59.2
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.0e-129 466.5 384 57.8
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 3.5e-129 465.7 392 57.4
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 1.0e-128 464.2 405 59.3
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 3.8e-128 462.2 415 54.7
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.5e-128 461.5 375 58.7
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 6.5e-128 461.5 375 58.7
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 8.5e-128 461.1 405 56.0
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 8.5e-128 461.1 395 56.2
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.1e-127 460.7 390 55.1
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 4.7e-126 455.3 384 57.3
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 4.7e-126 455.3 416 55.5
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.0e-125 454.1 397 56.4
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 3.3e-124 449.1 385 57.1
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.0e-116 423.3 403 52.6
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 2.8e-115 419.5 393 53.4
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 4.8e-115 418.7 392 52.3
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.9e-113 411.8 405 53.1
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 5.0e-112 408.7 403 50.9
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 7.2e-111 404.8 408 49.3
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.3e-107 394.0 405 49.1
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 4.7e-102 375.6 399 50.4
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.1e-102 375.2 380 52.1
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.7e-99 367.1 402 49.3
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.9e-95 353.6 404 45.8
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 2.3e-93 346.7 391 47.6
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 8.9e-93 344.7 399 45.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.2e-91 340.1 393 49.6
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.1e-87 327.8 405 43.5
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 1.9e-87 327.0 399 44.4
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 3.3e-87 326.2 377 48.5
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.8e-85 320.5 405 44.9
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 2.1e-81 307.0 367 45.2
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 7.8e-81 305.1 369 45.5
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 2.3e-80 303.5 369 46.3
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 8.6e-80 301.6 405 42.7
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.2e-78 297.7 377 46.4
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.2e-70 271.2 255 51.4
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 9.6e-63 245.0 205 60.0
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.4e-61 241.1 157 70.1
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 2.0e-60 237.3 182 61.0
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 5.5e-50 202.6 421 31.8
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 4.8e-38 162.9 154 53.9
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 4.6e-33 146.4 115 61.7
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 1.3e-30 138.3 106 65.1
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.3e-30 136.0 286 30.4
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.6e-28 130.6 366 28.1
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 8.5e-27 125.6 81 71.6
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 2.6e-15 87.4 409 24.7
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.9e-10 71.2 38 84.2
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 4.0e-08 63.5 49 59.2
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 6.7e-08 62.8 58 46.6


User provided reference genes

Program Settings