Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08313 Brassica carinata HOM05D001104 ORTHO05D039901 3.0e-41 171.4 86 100.0
BolC4t27122H Brassica oleracea HOM05D001104 ORTHO05D039901 3.0e-41 171.4 86 100.0
BcaC01g03604 Brassica carinata HOM05D001104 ORTHO05D094937 1.6e-26 122.5 67 89.6
C04p55890 Brassica napus HOM05D001872 ORTHO05D001859 1.8e-17 92.4 45 97.8
BcaC09g51528 Brassica carinata HOM05D001104 ORTHO05D006535 5.2e-17 90.9 51 88.2
A01p10280 Brassica napus HOM05D001104 ORTHO05D006535 5.2e-17 90.9 51 88.2
C01p12230 Brassica napus HOM05D001104 ORTHO05D006535 5.2e-17 90.9 51 88.2
BolC1t01199H Brassica oleracea HOM05D001104 ORTHO05D006535 5.2e-17 90.9 51 88.2
BraA01t00975Z Brassica rapa HOM05D001104 ORTHO05D006535 5.2e-17 90.9 51 88.2
BcaNung00010 Brassica carinata HOM05D001104 ORTHO05D006535 8.8e-17 90.1 51 86.3
Sp7g15700 Schrenkiella parvula HOM05D001104 ORTHO05D006535 9.8e-16 86.7 51 82.4
AL7G36010 Arabidopsis lyrata HOM05D001104 ORTHO05D006535 1.3e-15 86.3 50 84.0
CARHR225140 Cardamine hirsuta HOM05D001104 ORTHO05D006535 1.7e-15 85.9 50 84.0
Thhalv10025708m.g Eutrema salsugineum HOM05D001104 ORTHO05D006535 3.7e-15 84.7 51 78.4
AT4G18370 Arabidopsis thaliana HOM05D001104 ORTHO05D006535 6.3e-15 84.0 50 82.0
Carub.0007s2292 Capsella rubella HOM05D001104 ORTHO05D006535 1.4e-14 82.8 50 82.0
BcaC03g14180 Brassica carinata HOM05D001872 ORTHO05D001859 3.5e-13 78.2 45 84.4
C02p14560 Brassica napus HOM05D001872 ORTHO05D001859 3.5e-13 78.2 45 84.4
BolC2t07582H Brassica oleracea HOM05D001872 ORTHO05D001859 3.5e-13 78.2 45 84.4
Aa31LG6G1070 Aethionema arabicum HOM05D001104 ORTHO05D006535 5.9e-13 77.4 51 72.5
THA.LOC104812860 Tarenaya hassleriana HOM05D001104 ORTHO05D006535 1.0e-12 76.6 50 74.0
Duzib235G0771 Durio zibethinus HOM05D001104 ORTHO05D006535 2.1e-10 68.9 50 68.0
Thecc.06G148200 Theobroma cacao HOM05D001104 ORTHO05D006535 2.1e-10 68.9 50 68.0
Atru.chr10.1174 Acer truncatum HOM05D001104 ORTHO05D006535 2.8e-10 68.6 50 66.0
CiPaw.10G090500 Carya illinoinensis HOM05D001104 ORTHO05D006535 2.8e-10 68.6 50 66.0
Gohir.D10G043100 Gossypium hirsutum HOM05D001104 ORTHO05D006535 4.7e-10 67.8 50 62.0
Cc11_g03520 Coffea canephora HOM05D001104 ORTHO05D006535 6.1e-10 67.4 50 66.0
Gohir.A10G042200 Gossypium hirsutum HOM05D001104 ORTHO05D006535 6.1e-10 67.4 50 64.0
Gorai.011G045700 Gossypium raimondii HOM05D001104 ORTHO05D006535 6.1e-10 67.4 50 64.0
Psat1g191040 Pisum sativum HOM05D001104 ORTHO05D006535 6.1e-10 67.4 50 62.0
COL.COLO4_26643 Corchorus olitorius HOM05D001104 ORTHO05D006535 8.0e-10 67.0 50 64.0
Eucgr.E02422 Eucalyptus grandis HOM05D001104 ORTHO05D006535 8.0e-10 67.0 50 62.0
RcHm_v2.0_Chr5g0014431 Rosa chinensis HOM05D001104 ORTHO05D006535 8.0e-10 67.0 51 62.7
CsaV3_1G004620 Cucumis sativus L. HOM05D001104 ORTHO05D006535 1.0e-09 66.6 50 64.0
Oeu030938.1 Olea europaea HOM05D001104 ORTHO05D006535 1.0e-09 66.6 50 64.0
Rhsim13G0115200 Rhododendron simsii HOM05D001104 ORTHO05D006535 1.0e-09 66.6 50 64.0
QL05p057213 Quercus lobata HOM05D001104 ORTHO05D006535 1.4e-09 66.2 50 66.0
TAR627G0692 Trochodendron aralioides HOM05D001104 ORTHO05D006535 1.4e-09 66.2 50 62.0
CANSAT35G0592 Cannabis sativa HOM05D001104 ORTHO05D006535 2.3e-09 65.5 50 64.0
Sc24g0001720 Simmondsia chinensis HOM05D001104 ORTHO05D006535 2.3e-09 65.5 50 60.0
GSVIVG01004589001 Vitis vinifera HOM05D001104 ORTHO05D006535 2.3e-09 65.5 50 60.0
GSVIVG01021522001 Vitis vinifera HOM05D001104 ORTHO05D006535 2.3e-09 65.5 50 60.0
CSS0046912 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006535 3.0e-09 65.1 50 62.0
FvH4_3g05290 Fragaria vesca HOM05D001104 ORTHO05D006535 3.0e-09 65.1 50 62.0
FAN11G2893 Fragaria x ananassa HOM05D001104 ORTHO05D006535 3.0e-09 65.1 50 62.0
Prupe.4G083000 Prunus persica HOM05D001104 ORTHO05D006535 3.0e-09 65.1 50 64.0
Aqoxy4G00068 Aquilegia oxysepala HOM05D001104 ORTHO05D006535 4.0e-09 64.7 50 60.0
MELO3C002750.2 Cucumis melo HOM05D001104 ORTHO05D006535 4.0e-09 64.7 50 62.0
Medtr2g019140 Medicago truncatula HOM05D001104 ORTHO05D006535 4.0e-09 64.7 50 58.0
PGSC0003DMG400029873 Solanum tuberosum HOM05D001104 ORTHO05D006535 4.0e-09 64.7 50 62.0
DCAR_003899 Daucus carota HOM05D001104 ORTHO05D006535 5.2e-09 64.3 50 60.0
Lj6g0000691 Lotus japonicus HOM05D001104 ORTHO05D006535 5.2e-09 64.3 50 60.0
ClCG03G006710 Citrullus lanatus HOM05D001104 ORTHO05D006535 6.8e-09 63.9 50 60.0
FAN25G1463 Fragaria x ananassa HOM05D001104 ORTHO05D006535 6.8e-09 63.9 50 60.0
SalBow8G4304 Salvia bowleyana HOM05D001104 ORTHO05D006535 6.8e-09 63.9 50 62.0
TWI53G0561 Tripterygium wilfordii HOM05D001104 ORTHO05D006535 6.8e-09 63.9 50 62.0
Actinidia33715 Actinidia chinensis HOM05D001104 ORTHO05D006535 8.9e-09 63.5 50 62.0
Migut.M00896 Erythranthe guttata HOM05D001104 ORTHO05D006535 1.2e-08 63.2 50 58.0
Lj2A320T43 Lonicera japonica HOM05D001104 ORTHO05D006535 1.2e-08 63.2 50 58.0
MD05G1281600 Malus domestica HOM05D001104 ORTHO05D006535 1.2e-08 63.2 50 60.0
Ca_00531_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006535 1.5e-08 62.8 50 56.0
Ciclev10016002m.g Citrus clementina HOM05D001104 ORTHO05D006535 1.5e-08 62.8 50 62.0
MBI02_g46874_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006535 1.5e-08 62.8 50 58.0
PGR031G0308 Punica granatum HOM05D001104 ORTHO05D006535 1.5e-08 62.8 50 58.0
Sed0007195 Sechium edule HOM05D001104 ORTHO05D006535 1.5e-08 62.8 42 69.0
Nitab4.5_0000833g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006535 2.0e-08 62.4 50 58.0
SGA_v2.0_scaffold1G00192 Striga asiatica HOM05D001104 ORTHO05D006535 2.0e-08 62.4 50 58.0
CAN.G1145.1 Capsicum annuum HOM05D001104 ORTHO05D006535 2.6e-08 62.0 50 58.0
AUR62030175 Chenopodium quinoa HOM05D001104 ORTHO05D006535 2.6e-08 62.0 50 56.0
FAN21G1335 Fragaria x ananassa HOM05D001104 ORTHO05D006535 2.6e-08 62.0 50 60.0
Solyc08g048550.3 Solanum lycopersicum HOM05D001104 ORTHO05D006535 2.6e-08 62.0 50 60.0
Sopen08g010960 Solanum pennellii HOM05D001104 ORTHO05D006535 2.6e-08 62.0 50 60.0
FAN16G1841 Fragaria x ananassa HOM05D001104 ORTHO05D006535 3.4e-08 61.6 50 60.0
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 3.4e-08 61.6 50 56.0
Dinv32236 Davidia involucrata HOM05D001104 ORTHO05D006535 4.4e-08 61.2 47 59.6
Glyma.13G219400 Glycine max HOM05D001104 ORTHO05D006535 4.4e-08 61.2 50 56.0
Manes.17G072000 Manihot esculenta HOM05D001104 ORTHO05D006535 4.4e-08 61.2 50 58.0
Nn4g26599 Nelumbo nucifera HOM05D001104 ORTHO05D006535 4.4e-08 61.2 50 58.0
Sabra11G0066300 Salix brachista HOM05D001104 ORTHO05D006535 4.4e-08 61.2 50 56.0
unitig_748.g7673 Utricularia gibba HOM05D001104 ORTHO05D006535 5.7e-08 60.8 50 54.0
Cpa.g.sc17.5 Carica papaya HOM05D001104 ORTHO05D006535 7.5e-08 60.5 50 58.0
ECA236G1178 Erigeron canadensis HOM05D001104 ORTHO05D006535 7.5e-08 60.5 50 54.0
Glyma.15G092800 Glycine max HOM05D001104 ORTHO05D006535 7.5e-08 60.5 50 56.0
Nitab4.5_0009022g0010 Nicotiana tabacum HOM05D001104 ORTHO05D006535 7.5e-08 60.5 50 56.0
Lalb_Chr18g0055331 Lupinus albus HOM05D001104 ORTHO05D006535 9.8e-08 60.1 50 56.0
arahy.Tifrunner.gnm1.ann1.VE11WY Arachis hypogaea HOM05D001104 ORTHO05D006535 1.3e-07 59.7 50 56.0
AUR62002715 Chenopodium quinoa HOM05D001104 ORTHO05D006535 1.3e-07 59.7 50 52.0
vmacro03335 Vaccinium macrocarpon HOM05D001104 ORTHO05D006535 1.3e-07 59.7 50 58.0
VMungo0540G2226 Vigna mungo HOM05D001104 ORTHO05D006535 2.2e-07 58.9 50 54.0
Potri.011G083300 Populus trichocarpa HOM05D001104 ORTHO05D006535 3.7e-07 58.2 41 65.9
Hund17819 Selenicereus undatus HOM05D001104 ORTHO05D006535 3.7e-07 58.2 50 50.0
HanXRQChr04g0115731 Helianthus annuus HOM05D001104 ORTHO05D006535 4.9e-07 57.8 50 52.0
Lsat_1_v5_gn_7_27640 Lactuca sativa HOM05D001104 ORTHO05D006535 4.9e-07 57.8 50 54.0
Ah.14g086390 Amaranthus hybridus HOM05D001104 ORTHO05D006535 8.3e-07 57.0 50 50.0
Peaxi162Scf00317g00115 Petunia axillaris HOM05D001104 ORTHO05D006535 8.3e-07 57.0 50 54.0
MBI02_g43974_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006535 1.1e-06 56.6 44 56.8
HPP92_015669 Vanilla planifolia HOM05D001104 ORTHO05D006535 1.4e-06 56.2 52 55.8
Duzib133G1354 Durio zibethinus HOM05D001104 ORTHO05D006535 1.8e-06 55.8 50 58.0
PSO017G5739 Papaver somniferum HOM05D001104 ORTHO05D006535 7.0e-06 53.9 52 55.8
PSO396G0001 Papaver somniferum HOM05D001104 ORTHO05D006535 7.0e-06 53.9 52 55.8


User provided reference genes

Program Settings